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[186934_s_at]

Description Y39A3CR.4 /REP_DB=WormBase Gene ID /WP=CE21655 /TR=Q9N408 /GB=AAF60525.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 40      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 34      6grp_total > 50      4grp_total > 58      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3139
1 2 3 4 range
A 2437.7
(-1.9)
P 		3984.5
(1.7)
P 		4539.6
(3)
P 		1946
(-3)
P 		2594
B 2531.8
(-1)
P 		3858.9
(1.5)
P 		4647.8
(3)
P 		1509.2
(-3)
P 		3139
C 2417.6
(-1.1)
P 		4149
(3)
P 		3872.8
(2.3)
P 		1616.6
(-3)
P 		2532
avr 2462.4
(-1.3) 		3997.5
(2.2) 		4353.4
(3) 		1690.6
(-3) 		2663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2119
1 2 3 4 5 6 range
A 2436
(-1)
P 		2592.2
(-0.5)
P 		3679.9
(3)
P 		2880.3
(0.4)
P 		1805.6
(-3)
P 		1848.9
(-2.9)
P 		1874
B 2321
(-0.4)
P 		2490.2
(0.5)
P 		2940
(3)
P 		2173.3
(-1.2)
P 		2147.9
(-1.3)
P 		1840.2
(-3)
P 		1100
C 2425
(-1.2)
P 		2725.5
(-0.4)
P 		2864.8
(-0)
P 		3924.4
(3)
P 		1805.7
(-3)
P 		2962.6
(0.3)
P 		2119
avr 2394
(-0.7) 		2602.6
(0.3) 		3161.6
(3) 		2992.7
(2.2) 		1919.7
(-3) 		2217.2
(-1.6) 		1242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1077
1 2 3 4 range
A 887.6
(1)
P 		864.9
(0.9)
P 		1186.8
(3)
P 		284.9
(-3)
P 		902
B 807.4
(0.9)
P 		953.1
(2)
P 		1077
(3)
P 		321.6
(-3)
P 		755
C 800.3
(-0.1)
P 		1192.9
(2.1)
P 		1349.8
(3)
P 		272.6
(-3)
P 		1077
avr 831.8
(0.5) 		1003.6
(1.7) 		1204.5
(3) 		293
(-3) 		912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 449.1
(-3)
P 		921.9
(3)
P 		801.4
(1.5)
P 		730.5
(0.6)
P 		544.9
(-1.8)
P 		450.1
(-3)
P 		473
B 807.6
(1.7)
P 		828.9
(2.1)
P 		713.9
(-0.2)
P 		575.6
(-3)
P 		872.7
(3)
P 		686.2
(-0.8)
P 		297
C 898.8
(1.6)
P 		831.6
(0.6)
P 		729.1
(-0.9)
P 		789.2
(0)
P 		584.3
(-3)
P 		991.8
(3)
P 		408
avr 718.5
(-1.4) 		860.8
(3) 		748.1
(-0.5) 		698.4
(-2) 		667.3
(-3) 		709.4
(-1.7) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8327
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.4 NCBI
Target Description Y39A3CR.4 /REP_DB=WormBase Gene ID /WP=CE21655 /TR=Q9N408 /GB=AAF60525.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065066 NCBI Caenorhabditis elegans human DDP related family member (ddp-1) (ddp-1) mRNA, complete cds. 11/11 None
SNAP00000029612 ENSEMBL cdna:SNAP chromosome:CEL140:III:1855382:1860223:1 11/11 None
GENEFINDER00000029620 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1855382:1860223:1 11/11 None
Y39A3CR.4 ENSEMBL cdna:known chromosome:CEL140:III:1859880:1860315:1 gene:Y39A3CR.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1859881-1860223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ddp-1
Ensembl Y39A3CR.4
Entrez Gene 175331 Entrez gene
SwissProt Q9N408 EMBL-EBI
WormBase CE21655 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6626 protein targeting to mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60523 Hypothetical protein Y39A3CR.6 [Caenorhabditis elegans] ref|NP_497465.2| Y39A3CR.6 [Caenorhabditis elegans] 1.0E-149
blast CAE69107 Hypothetical protein CBG15133 [Caenorhabditis briggsae] 2.0E-71
blast AAF60525 Human ddp related protein 1 [Caenorhabditis elegans] ref|NP_497467.1| human DDP related family member (ddp-1) [Caenorhabditis elegans] 2.0E-44
blast AAD39993 small zinc finger-like protein [Caenorhabditis elegans] 7.0E-44
blast AAF60525 Human ddp related protein 1 [Caenorhabditis elegans] ref|NP_497467.1| human DDP related family member (ddp-1) [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 2.1E-30
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 2.1E-30
Sequence
Target Sequence 
>C. ELEGANS:186934_S_AT
attcctccagcaactgcaggcggagacgcagcgtcaaaaattcaccgaacaagtgcacac
gctcaccggtcgctgctgggatgtgtgcttcgccgactaccgtccgccaagcaagatgga
cggcaagactcagacctgtattcagaactgcgtaaaccgcatgatcgacgccagcaactt
catggtcgagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCTCCAGCAACTGCAGGCGGAG 696 7 42 Antisense
TCCAGCAACTGCAGGCGGAGACGCA 293 589 47 Antisense
ACTGCAGGCGGAGACGCAGCGTCAA 332 97 54 Antisense
GAGACGCAGCGTCAAAAATTCACCG 60 393 64 Antisense
TCACCGAACAAGTGCACACGCTCAC 159 627 83 Antisense
CTACCGTCCGCCAAGCAAGATGGAC 42 227 138 Antisense
GATGGACGGCAAGACTCAGACCTGT 458 405 156 Antisense
TCAGAACTGCGTAAACCGCATGATC 49 625 183 Antisense
GCGTAAACCGCATGATCGACGCCAG 167 291 191 Antisense
ATCGACGCCAGCAACTTCATGGTCG 153 37 205 Antisense
CGCCAGCAACTTCATGGTCGAGCAC 583 255 210 Antisense
Sequence Source Affymetrix Proprietary Database