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[186932_at]

Description C09G1.4 /REP_DB=WormBase Gene ID /WP=CE08042 /TR=SW:Q17865 /GB=CAA90541.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 18      6grp_total > 13      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 191.4
(3)
P 		128.5
(0.3)
M 		53.7
(-3)
A 		180.7
(2.5)
A 		138
B 200.2
(3)
P 		136.6
(-1.1)
M 		106.8
(-3)
A 		146.5
(-0.4)
A 		93
C 160.5
(2.7)
P 		129.9
(-0)
P 		96.3
(-3)
P 		164.2
(3)
P 		68
avr 184
(3) 		131.7
(-0.2) 		85.6
(-3) 		163.8
(1.8) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 194.3
(2.7)
P 		204.1
(3)
P 		140
(1)
P 		85.9
(-0.8)
A 		117.8
(0.3)
A 		15.8
(-3)
A 		188
B 200.8
(2.8)
P 		206.1
(3)
P 		149.8
(1.1)
P 		124.1
(0.2)
A 		91.6
(-0.9)
P 		29.6
(-3)
A 		177
C 192.3
(3)
P 		168.2
(1.9)
P 		149.9
(1)
P 		85.9
(-1.9)
A 		107.3
(-1)
A 		63.2
(-3)
P 		129
avr 195.8
(3) 		192.8
(2.9) 		146.6
(1.2) 		98.6
(-0.7) 		105.6
(-0.4) 		36.2
(-3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 69.7
(3)
P 		27.9
(-1.5)
M 		14
(-3)
A 		26.4
(-1.7)
A 		56
B 63.8
(3)
P 		33.7
(-1.6)
M 		24.7
(-3)
A 		31.2
(-2)
A 		39
C 53.1
(3)
P 		37.3
(-0.7)
P 		33.6
(-1.6)
P 		27.7
(-3)
P 		25
avr 62.2
(3) 		33
(-1.6) 		24.1
(-3) 		28.4
(-2.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 35.8
(-0.2)
P 		72.6
(3)
P 		30.5
(-0.7)
P 		21.8
(-1.4)
A 		35.5
(-0.2)
A 		3.8
(-3)
A 		69
B 69.9
(3)
P 		68.6
(2.9)
P 		36.4
(-0.4)
P 		32.9
(-0.8)
A 		37.2
(-0.3)
P 		11.1
(-3)
A 		59
C 71.3
(3)
P 		51.3
(0.8)
P 		38.2
(-0.7)
P 		17.3
(-3)
A 		34.7
(-1.1)
A 		21.1
(-2.6)
P 		54
avr 59
(2.4) 		64.2
(3) 		35
(-0.4) 		24
(-1.6) 		35.8
(-0.3) 		12
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18043
Sequence Type Exemplar sequence
Representative Public ID C09G1.4 NCBI
Target Description C09G1.4 /REP_DB=WormBase Gene ID /WP=CE08042 /TR=SW:Q17865 /GB=CAA90541.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078220 NCBI Caenorhabditis elegans C09G1.4 (C09G1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000010247 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15988148:15996850:-1 11/11 None
SNAP00000010244 ENSEMBL cdna:SNAP chromosome:CEL140:X:15988242:15995070:-1 11/11 None
C09G1.4 ENSEMBL cdna:known chromosome:CEL140:X:15988148:15996851:-1 gene:C09G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15988147-15996836(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G1.4
Entrez Gene 181679 Entrez gene
SwissProt Q17865 EMBL-EBI
WormBase CE08042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90541 Hypothetical protein C09G1.4 [Caenorhabditis elegans] ref|NP_510621.1| C09G1.4 [Caenorhabditis elegans] sp|Q17865|YTE4_CAEEL Hypothetical protein C09G1.4 in chromosome X 0.0
blast CAE70004 Hypothetical protein CBG16414 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186932_AT
gacggcgcctttaatgggatcatcttgccaattacatttggacaattcagatgagctaac
cgcatatcgagccctccagttccagatgatgcaagacgagttgcaaagacagcaaccccc
accacaatcattcgagcgaccgacccttttgcggcggactaacatgcctcaacaacagag
tttcaacataccacatatcactacaaccggaccaccgccaccagcgatggggctatctgt
gccagtgcagtatgatcaaggagaatatggaacacaaagcgtgagagctcagcttgttgc
acttgatcagagaggcttccgaagagtgcttgtcgagaagatgatgcccggaccattcgg
attttatattgcgaccggcgttgtagctggacaacgagctggaatcttcatctcccgagt
ctccctcccatccttatcaccgatgctaaccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCGCCTTTAATGGGATCATCT 236 377 1062 Antisense
ATGAGCTAACCGCATATCGAGCCCT 266 45 1112 Antisense
ACCCTTTTGCGGCGGACTAACATGC 202 35 1204 Antisense
TACCACATATCACTACAACCGGACC 84 651 1250 Antisense
GCGATGGGGCTATCTGTGCCAGTGC 255 291 1285 Antisense
AGAGCTCAGCTTGTTGCACTTGATC 64 71 1345 Antisense
GAGGCTTCCGAAGAGTGCTTGTCGA 574 403 1373 Antisense
GATGATGCCCGGACCATTCGGATTT 149 409 1401 Antisense
TATTGCGACCGGCGTTGTAGCTGGA 425 665 1428 Antisense
CAACGAGCTGGAATCTTCATCTCCC 2 189 1453 Antisense
ATCCTTATCACCGATGCTAACCGTT 612 39 1491 Antisense
Sequence Source Affymetrix Proprietary Database