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[186931_at]

Description C17H12.12 /REP_DB=WormBase Gene ID /WP=CE16872 /TR=O45084 /GB=AAC02590.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 29      6grp_total > 98      4grp_total > 33      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 53.9
(-3)
A 		109.8
(3)
P 		101.5
(2.1)
P 		89.4
(0.8)
A 		56
B 74.1
(1.5)
P 		33.7
(-3)
A 		87.7
(3)
M 		47.6
(-1.5)
A 		54
C 61.4
(-1.2)
M 		87.8
(1.9)
P 		45.9
(-3)
P 		97.3
(3)
P 		51
avr 63.1
(-3) 		77.1
(2.5) 		78.4
(3) 		78.1
(2.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 54.4
(-3)
P 		58.8
(-2.9)
M 		65.7
(-2.8)
P 		73.6
(-2.6)
P 		236
(0.4)
P 		370.9
(3)
P 		317
B 59.6
(-3)
P 		69
(-2.7)
P 		62.4
(-2.9)
P 		71.9
(-2.6)
P 		225.2
(2.2)
P 		252.3
(3)
P 		193
C 67.2
(-2.5)
P 		47.7
(-3)
P 		60.4
(-2.7)
M 		53.6
(-2.8)
A 		259.7
(2.6)
P 		273
(3)
P 		225
avr 60.4
(-3) 		58.5
(-3) 		62.8
(-2.9) 		66.4
(-2.8) 		240.3
(1.5) 		298.7
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.6
(-0.1)
A 		23.8
(1.8)
P 		26.5
(3)
P 		13.1
(-3)
A 		13
B 23.6
(3)
P 		8.3
(-3)
A 		20.3
(1.7)
M 		10.1
(-2.3)
A 		15
C 20.3
(-0.2)
M 		25.2
(3)
P 		16
(-3)
P 		16.4
(-2.7)
P 		9
avr 21.2
(3) 		19.1
(1.4) 		20.9
(2.8) 		13.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 10
(-3)
P 		20.9
(-2.2)
M 		14.3
(-2.7)
P 		18.7
(-2.3)
P 		71.2
(1.6)
P 		90.3
(3)
P 		80
B 20.7
(-2.6)
P 		23
(-2.4)
P 		15.2
(-3)
P 		19.1
(-2.7)
P 		91.5
(2.8)
P 		94.1
(3)
P 		79
C 24.9
(-2)
P 		14.5
(-2.7)
P 		15.4
(-2.7)
M 		10.8
(-3)
A 		84
(2.4)
P 		91.4
(3)
P 		81
avr 18.5
(-2.7) 		19.5
(-2.6) 		15
(-3) 		16.2
(-2.9) 		82.2
(2.2) 		91.9
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9403
Sequence Type Exemplar sequence
Representative Public ID C17H12.12 NCBI
Target Description C17H12.12 /REP_DB=WormBase Gene ID /WP=CE16872 /TR=O45084 /GB=AAC02590.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068641 NCBI Caenorhabditis elegans C17H12.12 (C17H12.12) mRNA, complete cds. 11/11 None
SNAP00000015108 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6796108:6798534:1 11/11 None
GENEFINDER00000015120 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6795388:6798676:1 11/11 None
C17H12.12 ENSEMBL cdna:known chromosome:CEL140:IV:6795425:6798534:1 gene:C17H12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6795430-6798540(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.12
Entrez Gene 177444 Entrez gene
SwissProt O45084 EMBL-EBI
WormBase CE16872 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02590 Hypothetical protein C17H12.12 [Caenorhabditis elegans] ref|NP_501042.1| C17H12.12 [Caenorhabditis elegans] 0.0
blast CAE61476 Hypothetical protein CBG05370 [Caenorhabditis briggsae] 1.0E-20
blast CAA92463 Hypothetical protein F27C8.5 [Caenorhabditis elegans] ref|NP_501703.1| F27C8.5 [Caenorhabditis elegans] 8.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-7
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-7
Sequence
Target Sequence 
>C. ELEGANS:186931_AT
gactaatgtttcgtgtgagagctctcaataatccacgtcattatgcaatggctgtggaac
gagaagttgaagcccagaaaattaagaaaatggagatggaccaactctatggtgattatg
agaaatcaaattatgttggtcatcaaaacaatccacagcccgatgtcaaccgttctcagt
attgttacacttctagaagtgttcatcatcctgcagatcagtatcaacatttggataaaa
gacaaagaaatctgagctattcagcgccacccaaaaactacgtgatcttatctcctcatt
caaacaacaatcgaagatcagttgattctcaaaattctaatcaaagttttgatggattgt
ctgcaaattctcagaactattatgatcaacagtttgctggaagatatacacacaacccag
acactgctggtccttcttcatccaattcggtttataacagaaatatgagagacgatggaa
ctagcggagcaaatggtaacgcagaagctggaccatcaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTAATGTTTCGTGTGAGAGCTCT 530 373 1316 Antisense
TGAGAGCTCTCAATAATCCACGTCA 641 567 1331 Antisense
TCAAAACAATCCACAGCCCGATGTC 634 629 1458 Antisense
CCGATGTCAACCGTTCTCAGTATTG 103 265 1475 Antisense
AGTGTTCATCATCCTGCAGATCAGT 572 59 1513 Antisense
GAAATCTGAGCTATTCAGCGCCACC 215 363 1562 Antisense
TCAGCGCCACCCAAAAACTACGTGA 168 625 1576 Antisense
AAACTACGTGATCTTATCTCCTCAT 579 127 1590 Antisense
CACAACCCAGACACTGCTGGTCCTT 499 193 1726 Antisense
TCCTTCTTCATCCAATTCGGTTTAT 128 593 1746 Antisense
AACGCAGAAGCTGGACCATCAACTT 563 143 1813 Antisense
Sequence Source Affymetrix Proprietary Database