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[186930_s_at]

Description F19F10.10 /REP_DB=WormBase Gene ID /WP=CE09490 /TR=O01525 /GB=AAB52288.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 165.8
(1.8)
P 		134.5
(-1.2)
P 		115.8
(-3)
P 		178.7
(3)
P 		63
B 190.6
(2.2)
P 		111
(-1.8)
P 		87.1
(-3)
P 		206.6
(3)
P 		120
C 149.6
(2.6)
P 		118.2
(-3)
P 		147.3
(2.2)
P 		151.7
(3)
P 		34
avr 168.7
(2) 		121.2
(-2.6) 		116.7
(-3) 		179
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 138.3
(-2.4)
P 		117.5
(-3)
P 		168.9
(-1.5)
P 		177.4
(-1.2)
P 		150.7
(-2)
P 		317.7
(3)
P 		200
B 172.4
(-1.8)
P 		138.6
(-3)
P 		182.3
(-1.4)
P 		182.4
(-1.4)
P 		195.6
(-0.9)
P 		301.8
(3)
P 		163
C 148.9
(-2.1)
P 		117.4
(-3)
P 		185.4
(-1)
P 		167.7
(-1.5)
P 		218.5
(0)
P 		318
(3)
P 		201
avr 153.2
(-2.1) 		124.5
(-3) 		178.9
(-1.3) 		175.8
(-1.4) 		188.3
(-1) 		312.5
(3) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 60.4
(3)
P 		29.2
(-2.5)
P 		30.3
(-2.3)
P 		26.2
(-3)
P 		34
B 60.8
(3)
P 		27.4
(-1.9)
P 		20.2
(-3)
P 		44
(0.5)
P 		41
C 49.5
(2.6)
P 		34
(-1)
P 		51.3
(3)
P 		25.6
(-3)
P 		26
avr 56.9
(3) 		30.2
(-3) 		33.9
(-2.2) 		31.9
(-2.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 25.5
(-3)
P 		41.8
(-1.1)
P 		36.8
(-1.7)
P 		45
(-0.7)
P 		45.5
(-0.7)
P 		77.3
(3)
P 		52
B 60
(-1.6)
P 		46.1
(-2.8)
P 		44.3
(-3)
P 		48.3
(-2.6)
P 		79.5
(0.1)
P 		112.6
(3)
P 		68
C 55.2
(-1.2)
P 		35.8
(-2.8)
P 		47.2
(-1.9)
P 		33.7
(-3)
P 		70.7
(0.1)
P 		106.4
(3)
P 		73
avr 46.9
(-2.4) 		41.2
(-3) 		42.8
(-2.8) 		42.3
(-2.9) 		65.2
(-0.5) 		98.8
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186930_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12407
Sequence Type Exemplar sequence
Representative Public ID F19F10.10 NCBI
Target Description F19F10.10 /REP_DB=WormBase Gene ID /WP=CE09490 /TR=O01525 /GB=AAB52288.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072553 NCBI Caenorhabditis elegans F19F10.10 (F19F10.10) mRNA, complete cds. 11/11 None
GENEFINDER00000016045 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7580153:7583071:-1 11/11 None
F19F10.10 ENSEMBL cdna:known chromosome:CEL140:V:7580132:7583091:-1 gene:F19F10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016034 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7580153-7583072(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.10
Entrez Gene 179141 Entrez gene
SwissProt O01525 EMBL-EBI
WormBase CE09490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52288 Hypothetical protein F19F10.10 [Caenorhabditis elegans] ref|NP_504954.1| F19F10.10 [Caenorhabditis elegans] 0.0
blast AAB52289 Hypothetical protein F19F10.11a [Caenorhabditis elegans] ref|NP_504955.1| F19F10.11a [Caenorhabditis elegans] pir||T25715 hypothetical protein F19F10.11a - Caenorhabditis elegans 1.0E-107
blast AAB52290 Hypothetical protein F19F10.11b [Caenorhabditis elegans] ref|NP_504956.1| F19F10.11b [Caenorhabditis elegans] pir||T25716 hypothetical protein F19F10.11b - Caenorhabditis elegans 4.0E-82
Sequence
Target Sequence 
>C. ELEGANS:186930_S_AT
tgtatccaatgtggtaaccgccgtcccgatgtcataagaaaaatcgtatcgacggactac
gaacgcttgcttcttcttctctctgcatttcgtaatagattgataacgttggacaatgct
aaaactcgaaatactattccaacagcgtcatattgtatttcacatcttacggatgcatgt
gatgagatcttctcgatcttcagagttagacaacccgaagacattctagacgtaaaggag
atcgatacgagagtgctgggaactgcgatcaccattgcaggcgacaagagattgcacttt
tgccaattccaagaatattgccgcaagtttaccatcaaaaattgccaaaaatcttgctca
atttgtcaaaaaatcgattatcgcaaagacatggccaacatccagaaacacgcggggaga
ttggcaaattgcatgaaatctgggactttggaggcaccggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCCAATGTGGTAACCGCCGTC 192 561 2125 Antisense
ATCGACGGACTACGAACGCTTGCTT 706 35 2172 Antisense
TTCTTCTCTCTGCATTTCGTAATAG 80 691 2198 Antisense
GAAATACTATTCCAACAGCGTCATA 427 363 2252 Antisense
GAGAGTGCTGGGAACTGCGATCACC 586 395 2373 Antisense
TGCGATCACCATTGCAGGCGACAAG 626 579 2388 Antisense
GAGATTGCACTTTTGCCAATTCCAA 181 397 2412 Antisense
AATATTGCCGCAAGTTTACCATCAA 565 173 2438 Antisense
TTATCGCAAAGACATGGCCAACATC 272 681 2502 Antisense
GCCAACATCCAGAAACACGCGGGGA 485 277 2518 Antisense
AATCTGGGACTTTGGAGGCACCGGC 532 139 2561 Antisense
Sequence Source Affymetrix Proprietary Database