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[186929_at]

Description ZK265.6 /REP_DB=WormBase Gene ID /WP=CE15299 /TR=SW:Q94402 /GB=CAB03516.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 97      6grp_total > 96      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 897
1 2 3 4 range
A 1515.6
(-0.4)
P 		1714
(3)
P 		1511
(-0.5)
P 		1361.5
(-3)
P 		353
B 1015.2
(-3)
P 		1241.2
(-0.7)
P 		1041.6
(-2.7)
P 		1595.6
(3)
P 		580
C 1034.1
(-3)
P 		1096.3
(-2.6)
P 		1912.5
(3)
P 		1504.7
(0.2)
P 		878
avr 1188.3
(-3) 		1350.5
(0.2) 		1488.4
(3) 		1487.3
(3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1072
1 2 3 4 5 6 range
A 584.2
(-3)
P 		1008.5
(-0.6)
P 		905.4
(-1.2)
P 		1206.1
(0.5)
P 		982.8
(-0.8)
P 		1655.9
(3)
P 		1072
B 803.1
(-2.8)
P 		1016.4
(-1.2)
P 		772.3
(-3)
P 		1041.7
(-1)
P 		1564.2
(3)
P 		1343.2
(1.3)
P 		792
C 955.3
(-1.5)
P 		817.8
(-3)
P 		1030.4
(-0.7)
P 		830.4
(-2.9)
P 		1295.3
(2.2)
P 		1371.7
(3)
P 		554
avr 780.9
(-3) 		947.6
(-1.5) 		902.7
(-1.9) 		1026.1
(-0.8) 		1280.8
(1.4) 		1456.9
(3) 		676
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 551.8
(3)
P 		372.1
(-0.1)
P 		395
(0.3)
P 		199.3
(-3)
P 		353
B 323.7
(2)
P 		306.6
(1)
P 		241.4
(-3)
P 		340
(3)
P 		99
C 342.3
(-1.7)
P 		315.2
(-2.1)
P 		666.6
(3)
P 		253.7
(-3)
P 		413
avr 405.9
(2) 		331.3
(-0.6) 		434.3
(3) 		264.3
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 107.7
(-3)
P 		358.7
(2.1)
P 		197.2
(-1.2)
P 		305.9
(1)
P 		296.6
(0.8)
P 		403.2
(3)
P 		296
B 279.4
(-1.8)
P 		338.3
(-1)
P 		187.5
(-3)
P 		275.9
(-1.8)
P 		635.5
(3)
P 		500.9
(1.2)
P 		448
C 354.1
(0.8)
P 		249.5
(-1.3)
P 		262.3
(-1)
P 		167
(-3)
P 		419.1
(2.2)
P 		459.2
(3)
P 		292
avr 247.1
(-2.2) 		315.5
(-0.5) 		215.7
(-3) 		249.6
(-2.1) 		450.4
(2.9) 		454.4
(3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.828
Sequence Type Exemplar sequence
Representative Public ID ZK265.6 NCBI
Target Description ZK265.6 /REP_DB=WormBase Gene ID /WP=CE15299 /TR=SW:Q94402 /GB=CAB03516.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059847 NCBI Caenorhabditis elegans ZK265.6 (ZK265.6) mRNA, complete cds. 11/11 None
SNAP00000032251 ENSEMBL cdna:SNAP chromosome:CEL140:I:8263478:8264331:1 11/11 None
GENEFINDER00000032259 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8263478:8264331:1 11/11 None
ZK265.6 ENSEMBL cdna:known chromosome:CEL140:I:8263478:8264370:1 gene:ZK265.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8263408-8264262(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK265.6
Entrez Gene 191277 Entrez gene
SwissProt Q94402 EMBL-EBI
WormBase CE15299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03516 Hypothetical protein ZK265.6 [Caenorhabditis elegans] ref|NP_492248.1| ZK265.6 [Caenorhabditis elegans] sp|Q94402|YHHN_CAEEL Hypothetical protein ZK265.6 in chromosome I 7.0E-97
blast CAE57069 Hypothetical protein CBG24963 [Caenorhabditis briggsae] 2.0E-83
blast BAC40235.1 unnamed protein product [Mus musculus] 5.0E-13
Sequence
Target Sequence 
>C. ELEGANS:186929_AT
aagactcctcgagaaaacgtccgcgacatgggtatcgcatttaatccaaatgacgcggtt
ccaatcgctgaacacagaaaagagatcatcgacgcggagccaattgacggtgtcagtatt
gttgttcccaaaccggaaaagaaagttactggaagaaaaaagaatgagaaacaggcagca
cacattatctcaaatctggaacagcaagtgaaagaagaagaggaagctcgagctggacaa
gaccggaaattccgacttttccatagagaaaccgagctttgtgtctacatgctggctcgt
cacggcgaagattttcaagcaatgactcgtgatccgaagaatttatggcaatacacaccg
aagcagtgggcgaagaagatccgtacacacaaagagtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTCCTCGAGAAAACGTCCGCG 11 123 154 Antisense
AACGTCCGCGACATGGGTATCGCAT 183 145 169 Antisense
CAAATGACGCGGTTCCAATCGCTGA 518 193 200 Antisense
ATCGACGCGGAGCCAATTGACGGTG 488 33 241 Antisense
GACGGTGTCAGTATTGTTGTTCCCA 521 377 259 Antisense
GAAACAGGCAGCACACATTATCTCA 30 357 321 Antisense
AAGCTCGAGCTGGACAAGACCGGAA 133 151 377 Antisense
AGCTTTGTGTCTACATGCTGGCTCG 439 79 428 Antisense
CTGGCTCGTCACGGCGAAGATTTTC 483 241 445 Antisense
TTCAAGCAATGACTCGTGATCCGAA 114 681 467 Antisense
GAAGATCCGTACACACAAAGAGTCC 702 337 528 Antisense
Sequence Source Affymetrix Proprietary Database