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[186928_at]

Description Y53C10A.10 /REP_DB=WormBase Gene ID /WP=CE22378 /TR=Q9XW47 /GB=CAA22144.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.8
(-0.5)
A 		4.5
(0.7)
A 		5.8
(3)
A 		2.4
(-3)
A 		3
B 2.2
(-3)
A 		3.6
(2.6)
A 		2.7
(-1)
A 		3.7
(3)
A 		2
C 2.6
(-3)
A 		3.2
(-1.2)
A 		4.6
(3)
A 		3.8
(0.6)
A 		2
avr 2.9
(-3) 		3.8
(0.6) 		4.4
(3) 		3.3
(-1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5
(1)
A 		2
(-3)
A 		2.2
(-2.7)
A 		2.1
(-2.9)
A 		6.5
(3)
A 		4.2
(-0.1)
A 		5
B 3.3
(1.8)
A 		3.6
(3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		2.9
(0.2)
A 		2
C 1.7
(-3)
A 		2.8
(-2.7)
A 		4
(-2.4)
A 		2.2
(-2.9)
A 		23.1
(3)
A 		2.1
(-2.9)
A 		21
avr 3.3
(-2.2) 		2.8
(-2.5) 		2.8
(-2.5) 		2.1
(-3) 		10.6
(3) 		3.1
(-2.3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.4
(2.5)
A 		1
(0.3)
A 		1.5
(3)
A 		0.4
(-3)
A 		1
B 0.7
(-1)
A 		0.9
(3)
A 		0.6
(-3)
A 		0.8
(1)
A 		0
C 0.8
(-1.8)
A 		0.9
(-1.2)
A 		1.6
(3)
A 		0.6
(-3)
A 		1
avr 1
(1) 		0.9
(0) 		1.2
(3) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-1.4)
A 		0.7
(-2.2)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2
(3)
A 		1
(-1)
A 		2
B 1.1
(2.1)
A 		1.2
(3)
A 		0.5
(-3)
A 		0.6
(-2.1)
A 		0.8
(-0.4)
A 		1.1
(2.1)
A 		1
C 0.6
(-2.8)
A 		0.9
(-2.6)
A 		1
(-2.5)
A 		0.4
(-3)
A 		7.5
(3)
A 		0.7
(-2.7)
A 		7
avr 0.9
(-2.2) 		0.9
(-2.2) 		0.7
(-2.6) 		0.5
(-3) 		3.4
(3) 		0.9
(-2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2507
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.10 NCBI
Target Description Y53C10A.10 /REP_DB=WormBase Gene ID /WP=CE22378 /TR=Q9XW47 /GB=CAA22144.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060641 NCBI Caenorhabditis elegans Y53C10A.10 (Y53C10A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000000700 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12028719:12036420:1 11/11 None
SNAP00000000692 ENSEMBL cdna:SNAP chromosome:CEL140:I:12032714:12036420:1 11/11 None
Y53C10A.10 ENSEMBL cdna:known chromosome:CEL140:I:12028719:12036420:1 gene:Y53C10A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12028649-12036351(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53C10A.10
Entrez Gene 190195 Entrez gene
SwissProt Q9XW47 EMBL-EBI
WormBase CE22378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22144 Hypothetical protein Y53C10A.10 [Caenorhabditis elegans] ref|NP_493042.1| Y53C10A.10 [Caenorhabditis elegans] 0.0
blast CAA22144 Hypothetical protein Y53C10A.10 [Caenorhabditis elegans] ref|NP_493042.1| Y53C10A.10 [Caenorhabditis elegans] 8.0E-32
blast CAB05287 Hypothetical protein T27E7.1 [Caenorhabditis elegans] ref|NP_502759.1| T27E7.1 [Caenorhabditis elegans] 2.0E-27
blast CAB05287 Hypothetical protein T27E7.1 [Caenorhabditis elegans] ref|NP_502759.1| T27E7.1 [Caenorhabditis elegans] 5.0E-27
blast CAE61796 Hypothetical protein CBG05759 [Caenorhabditis briggsae] 4.0E-18
blast CAE61796 Hypothetical protein CBG05759 [Caenorhabditis briggsae] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186928_AT
tctaaaagtacaccttccttcctgagcccaactgattccttgacagctacaacgccacca
ggatcaaccacacaagccgctagcaccacggaatctgcaatggcttcgagcatcgagtct
ccgacggctagtgttacagtgtcaagtccaaatacaagatccacgacatcaacaattttc
acttcttcggagattcgaccgacttctagcatcactatattgggcgttgagtcgactaca
gcttcatcaactggatccacaacgtccgagtcaaccaccagctccacagaacctccaaca
acacaggaagatagaaaaactacaacttctacatccacatccacttctaccacagaatcc
acgactactgatacgaccaccacggagccaggcatcatgttcgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAAAAGTACACCTTCCTTCCTGA 108 545 1309 Antisense
TGAGCCCAACTGATTCCTTGACAGC 93 569 1331 Antisense
GAATCTGCAATGGCTTCGAGCATCG 81 329 1399 Antisense
AGTCTCCGACGGCTAGTGTTACAGT 574 59 1424 Antisense
GACATCAACAATTTTCACTTCTTCG 274 371 1473 Antisense
GACCGACTTCTAGCATCACTATATT 642 381 1505 Antisense
GAGTCGACTACAGCTTCATCAACTG 512 399 1537 Antisense
TCAACTGGATCCACAACGTCCGAGT 74 631 1555 Antisense
AAAACTACAACTTCTACATCCACAT 397 129 1624 Antisense
GAATCCACGACTACTGATACGACCA 52 331 1663 Antisense
CGGAGCCAGGCATCATGTTCGATCC 300 243 1691 Antisense
Sequence Source Affymetrix Proprietary Database