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[186926_s_at]

Description PAR2.4 /REP_DB=WormBase Gene ID /WP=CE00848 /TR=SW:P45895 /GB=AAA50619.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 60      6grp_total > 38      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 557.5
(3)
P 		472.8
(0.2)
P 		378.4
(-3)
P 		483.2
(0.5)
P 		179
B 481
(3)
P 		444.3
(1.1)
P 		390.2
(-1.8)
P 		368
(-3)
P 		113
C 587.2
(2.1)
P 		615.6
(3)
P 		429.8
(-3)
P 		435.8
(-2.8)
P 		186
avr 541.9
(3) 		510.9
(1.7) 		399.5
(-3) 		429
(-1.8) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 471.6
(1.4)
P 		552.6
(3)
P 		250.2
(-3)
P 		346.4
(-1.1)
P 		386.4
(-0.3)
P 		455
(1.1)
P 		302
B 422.4
(2.4)
P 		410.2
(1.9)
P 		292.9
(-3)
P 		325.8
(-1.6)
P 		320.9
(-1.8)
P 		437.3
(3)
P 		144
C 594.6
(3)
P 		372.6
(-1.8)
P 		390.4
(-1.4)
P 		317.4
(-3)
P 		451.2
(-0.1)
P 		448.4
(-0.2)
P 		277
avr 496.2
(3) 		445.1
(1.3) 		311.2
(-3) 		329.9
(-2.4) 		386.2
(-0.6) 		446.9
(1.4) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 203
(3)
P 		102.6
(-1.6)
P 		98.9
(-1.7)
P 		70.7
(-3)
P 		132
B 153.4
(3)
P 		109.7
(-0.5)
P 		90.4
(-2)
P 		78.4
(-3)
P 		75
C 194.4
(3)
P 		177
(2.1)
P 		149.8
(0.8)
P 		73.5
(-3)
P 		121
avr 183.6
(3) 		129.8
(0) 		113
(-0.9) 		74.2
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 86.9
(-1.6)
P 		196.5
(3)
P 		54.5
(-3)
P 		87.8
(-1.6)
P 		116.6
(-0.4)
P 		110.8
(-0.6)
P 		142
B 147
(2)
P 		136.5
(1.3)
P 		71.1
(-3)
P 		86.3
(-2)
P 		130.4
(0.9)
P 		163.1
(3)
P 		92
C 220.4
(3)
P 		113.7
(-1.1)
P 		99.4
(-1.6)
P 		63.8
(-3)
P 		146
(0.1)
P 		150.1
(0.3)
P 		157
avr 151.4
(3) 		148.9
(2.8) 		75
(-3) 		79.3
(-2.7) 		131
(1.4) 		141.3
(2.2) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7787
Sequence Type Exemplar sequence
Representative Public ID PAR2.4 NCBI
Target Description PAR2.4 /REP_DB=WormBase Gene ID /WP=CE00848 /TR=SW:P45895 /GB=AAA50619.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066533(11), NM_181942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066533 NCBI Caenorhabditis elegans PAR2.4a (PAR2.4) mRNA, complete cds. 11/11 None
NM_181942 NCBI Caenorhabditis elegans PAR2.4b (PAR2.4) mRNA, complete cds. 11/11 None
SNAP00000027075 ENSEMBL cdna:SNAP chromosome:CEL140:III:8763793:8767111:-1 11/11 None
GENEFINDER00000027080 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8763793:8767111:-1 11/11 None
PAR2.4a.3 ENSEMBL cdna:known chromosome:CEL140:III:8763193:8767244:-1 gene:PAR2.4 11/11 None
PAR2.4a.2 ENSEMBL cdna:known chromosome:CEL140:III:8763193:8767244:-1 gene:PAR2.4 11/11 None
PAR2.4a.1 ENSEMBL cdna:known chromosome:CEL140:III:8763448:8767237:-1 gene:PAR2.4 11/11 A 
PAR2.4b ENSEMBL cdna:known chromosome:CEL140:III:8763793:8767227:-1 gene:PAR2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8763788-8767107(-) 100.0 100.0
Public Domain and Genome References
Ensembl PAR2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50619 Hypothetical protein PAR2.4a [Caenorhabditis elegans] ref|NP_498934.1| PAR2.4a [Caenorhabditis elegans] dbj|BAD80738.1| chondroitin polymerizing factor [Caenorhabditis elegans] sp|P45895|YNA4_CAEEL Hypothetical protein PAR2.4 in chromosome III 0.0
blast CAE62751 Hypothetical protein CBG06915 [Caenorhabditis briggsae] 0.0
blast AAN65312 Hypothetical protein PAR2.4b [Caenorhabditis elegans] ref|NP_871671.1| PAR2.4b [Caenorhabditis elegans] dbj|BAD80739.1| chondroitin polymerizing factor-S [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008428 EMBL-EBI Chondroitin N-acetylgalactosaminyltransferase 1.0E-126
Pfam IPR008428 EMBL-EBI Chondroitin N-acetylgalactosaminyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498934.1 1 7-29
PAR2.4a.3 1 7-29
PAR2.4a.2 1 7-29
PAR2.4a.1 1 7-29
SNAP00000027075 1 7-29
GENEFINDER00000027080 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186926_S_AT
ctgctgctgctgcgttggatgatgctgtggatcgatacggagccaatacaatctatcttc
tactttctccacatgcagatgttcaaaaagagttctttgatcgagctcgtatcaatacga
ttaaacattatcaagttttcttcccagttccatttgttgaatatcatccgacaatctctg
gaatggaaatgacagaaaaagaagaaaaagagacgccgacagaacaagctcgtgaagctg
ctttatcacgattaagagatggagttgaaccaaaaaggaaaagaacattgattgtacaaa
aagaacatggacgatttgattctcaagatttctcttgtttcgccgtttatggtgtggatt
atgtgacagcaagagctaaattcggtcaaaatgagagacggaacgacttgatttctgcgt
tcttgggacaagattctatacatgtacttagggctgttgagccaactctccgaattcgat
atcacaaaagaagctgtgacatggaaagcatcgacaccgaagatatcgctcgttgcctgg
acagtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTGCTGCTGCGTTGGATGATGC 625 237 1823 Antisense
ATACAATCTATCTTCTACTTTCTCC 367 25 1868 Antisense
TCTACTTTCTCCACATGCAGATGTT 137 615 1881 Antisense
AGAGTTCTTTGATCGAGCTCGTATC 29 69 1911 Antisense
TTATCAAGTTTTCTTCCCAGTTCCA 60 667 1950 Antisense
GAGACGCCGACAGAACAAGCTCGTG 13 395 2032 Antisense
TTCTCTTGTTTCGCCGTTTATGGTG 375 691 2152 Antisense
ACTTGATTTCTGCGTTCTTGGGACA 651 103 2228 Antisense
GAGCCAACTCTCCGAATTCGATATC 300 385 2281 Antisense
GCATCGACACCGAAGATATCGCTCG 228 309 2330 Antisense
TATCGCTCGTTGCCTGGACAGTAAA 276 657 2346 Antisense
Sequence Source Affymetrix Proprietary Database