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[186925_at]

Description Y62E10A.17 /REP_DB=WormBase Gene ID /WP=CE25526 /TR=Q9U1W4 /GB=CAB60610.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 22      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 64.4
(3)
A 		57.7
(2.3)
A 		3.1
(-3)
A 		17.3
(-1.6)
A 		61
B 24.9
(-1)
A 		13.5
(-2.1)
A 		4.5
(-3)
A 		66.6
(3)
A 		62
C 58
(2.9)
A 		8.3
(-3)
A 		28.4
(-0.6)
A 		58.7
(3)
A 		50
avr 49.1
(3) 		26.5
(-0.7) 		12
(-3) 		47.5
(2.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 7.9
(-3)
A 		40.4
(-1.6)
A 		8.6
(-3)
A 		27.3
(-2.2)
A 		114.7
(1.5)
A 		150
(3)
P 		142
B 56.2
(-0.8)
A 		54
(-0.9)
A 		9.6
(-3)
A 		31.8
(-1.9)
A 		85.2
(0.6)
A 		134.9
(3)
P 		125
C 25.2
(-2.3)
A 		7.5
(-3)
A 		13.8
(-2.7)
A 		49.2
(-1.3)
A 		59.4
(-0.8)
A 		152.1
(3)
P 		145
avr 29.8
(-2.2) 		34
(-2) 		10.7
(-3) 		36.1
(-1.9) 		86.4
(0.4) 		145.7
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.4
(3)
A 		12.5
(0.1)
A 		0.8
(-3)
A 		2.5
(-2.5)
A 		23
B 7.9
(0.1)
A 		3.3
(-2)
A 		1.1
(-3)
A 		14.2
(3)
A 		13
C 19.2
(3)
A 		2.4
(-3)
A 		9.9
(-0.3)
A 		9.9
(-0.3)
A 		17
avr 16.8
(3) 		6.1
(-2) 		3.9
(-3) 		8.9
(-0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.5
(-3)
A 		14.4
(-0.8)
A 		1.9
(-2.9)
A 		6.9
(-2.1)
A 		34.6
(2.7)
A 		36.5
(3)
P 		35
B 19.6
(-0.8)
A 		18
(-1)
A 		2.3
(-3)
A 		8.4
(-2.2)
A 		34.6
(1)
A 		50.3
(3)
P 		48
C 9.3
(-2.1)
A 		2.3
(-3)
A 		3.5
(-2.9)
A 		9.9
(-2.1)
A 		19.2
(-0.9)
A 		50.9
(3)
P 		49
avr 10.1
(-2) 		11.6
(-1.8) 		2.6
(-3) 		8.4
(-2.2) 		29.5
(0.7) 		45.9
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10362
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.17 NCBI
Target Description Y62E10A.17 /REP_DB=WormBase Gene ID /WP=CE25526 /TR=Q9U1W4 /GB=CAB60610.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070185 NCBI Caenorhabditis elegans Y62E10A.17 (Y62E10A.17) mRNA, complete cds. 11/11 None
SNAP00000008087 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13413645:13414840:-1 11/11 None
GENEFINDER00000008100 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13413645:13414840:-1 11/11 None
Y62E10A.17 ENSEMBL cdna:known chromosome:CEL140:IV:13413645:13414840:-1 gene:Y62E10A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13413650-13414846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62E10A.17
Entrez Gene 190458 Entrez gene
SwissProt Q9U1W4 EMBL-EBI
WormBase CE25526 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60610 Hypothetical protein Y62E10A.17 [Caenorhabditis elegans] ref|NP_502586.1| Y62E10A.17 [Caenorhabditis elegans] 0.0
blast CAE62290 Hypothetical protein CBG06350 [Caenorhabditis briggsae] 2.0E-42
blast CAE56343 Hypothetical protein CBG24015 [Caenorhabditis briggsae] 1.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004979 EMBL-EBI Transcription factor AP-2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186925_AT
aactgatgcgcgctcaactgagagatcatggaatcaaggttcaactgaatgcgaaacaga
aggcttttcccaacaaagtgatcgctttggtcgaagcggaagctgttcatttgggacttg
atcttggaacagctgtacgagatgattatccagttcaagatataattcaagaagttgctc
atgaagcattggctgacgaggatgcagatctggatgcgttgatgaatgataaggatttca
cagaatgtatgtcagcacttgaatcagttttcacatcagtcgtccctccgatcactggaa
tcgagccaaaaccgtcgaacaacatgcgactgaacaatggaatggagaccttttcatcag
cttcacatggacttggaatcgtgtctcaacgggtttggctcccccaattgactgcaatcg
gaaatggagtcgcatctgaacttcgacgcttgacagagacgccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGATGCGCGCTCAACTGAGAGA 406 137 608 Antisense
GCGGAAGCTGTTCATTTGGGACTTG 417 293 703 Antisense
GGGACTTGATCTTGGAACAGCTGTA 372 495 720 Antisense
GAATCAGTTTTCACATCAGTCGTCC 333 327 868 Antisense
GTCCCTCCGATCACTGGAATCGAGC 238 475 889 Antisense
GAGCCAAAACCGTCGAACAACATGC 131 385 910 Antisense
GAATGGAGACCTTTTCATCAGCTTC 446 333 947 Antisense
AATCGTGTCTCAACGGGTTTGGCTC 485 167 984 Antisense
CTCCCCCAATTGACTGCAATCGGAA 190 235 1006 Antisense
GAGTCGCATCTGAACTTCGACGCTT 307 401 1034 Antisense
TTCGACGCTTGACAGAGACGCCAAC 163 695 1049 Antisense
Sequence Source Affymetrix Proprietary Database