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[186923_at]

Description Y116A8C.23 /REP_DB=WormBase Gene ID /WP=CE24149 /TR=Q9U2S2 /GB=CAB55155.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 28.6
(-2.1)
A 		17.8
(-3)
A 		24.7
(-2.4)
A 		88.4
(3)
A 		71
B 13.6
(-3)
A 		16.5
(-2.7)
A 		69.2
(3)
A 		42.7
(0.1)
A 		56
C 71.9
(-3)
A 		79
(1.3)
A 		81.8
(3)
A 		81.4
(2.8)
A 		10
avr 38
(-3) 		37.8
(-3) 		58.6
(0.8) 		70.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 68.6
(-0.4)
A 		58.4
(-0.8)
A 		34.9
(-1.8)
A 		8.1
(-3)
A 		147.4
(3)
P 		100.6
(1)
P 		139
B 65.6
(-0.4)
A 		8.7
(-3)
A 		25.8
(-2.2)
A 		88.3
(0.6)
A 		141.1
(3)
P 		133.7
(2.7)
P 		132
C 52.8
(-0.8)
A 		63.5
(-0.3)
A 		8
(-3)
A 		77.5
(0.4)
A 		72.8
(0.2)
P 		131.2
(3)
P 		123
avr 62.3
(-0.6) 		43.5
(-1.8) 		22.9
(-3) 		58
(-0.9) 		120.4
(2.9) 		121.8
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 10.4
(1.3)
A 		3.9
(-3)
A 		6.4
(-1.3)
A 		12.9
(3)
A 		9
B 4.3
(-2.9)
A 		4.1
(-3)
A 		16
(3)
A 		9.1
(-0.5)
A 		12
C 23.8
(1.1)
A 		22.7
(0.6)
A 		28.5
(3)
A 		13.7
(-3)
A 		15
avr 12.8
(-0.7) 		10.2
(-3) 		17
(3) 		11.9
(-1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 12.6
(-1.5)
A 		20.8
(-0.4)
A 		7.6
(-2.2)
A 		2.1
(-3)
A 		44.5
(3)
P 		24.5
(0.2)
P 		42
B 22.8
(-0.8)
A 		2.9
(-3)
A 		6.3
(-2.6)
A 		23.4
(-0.7)
A 		57.3
(3)
P 		49.8
(2.2)
P 		54
C 19.6
(-0.5)
A 		19.4
(-0.5)
A 		2
(-3)
A 		15.6
(-1.1)
A 		23.6
(0.1)
P 		43.9
(3)
P 		42
avr 18.3
(-0.9) 		14.4
(-1.5) 		5.3
(-3) 		13.7
(-1.6) 		41.8
(3) 		39.4
(2.6) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8961
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.23 NCBI
Target Description Y116A8C.23 /REP_DB=WormBase Gene ID /WP=CE24149 /TR=Q9U2S2 /GB=CAB55155.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070622 NCBI Caenorhabditis elegans Y116A8C.23 (Y116A8C.23) mRNA, complete cds. 11/11 None
SNAP00000004093 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17053630:17055430:1 11/11 None
GENEFINDER00000004183 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17053630:17057265:1 9/11 None
Y116A8C.23 ENSEMBL cdna:known chromosome:CEL140:IV:17053551:17055430:1 gene:Y116A8C.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17053635-17055436(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.23
Entrez Gene 178480 Entrez gene
SwissProt Q9U2S2 EMBL-EBI
WormBase CE24149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55155 Hypothetical protein Y116A8C.23 [Caenorhabditis elegans] ref|NP_503023.1| Y116A8C.23 [Caenorhabditis elegans] 1.0E-138
blast CAB55155 Hypothetical protein Y116A8C.23 [Caenorhabditis elegans] ref|NP_503023.1| Y116A8C.23 [Caenorhabditis elegans] 1.0E-104
blast CAE69559 Hypothetical protein CBG15771 [Caenorhabditis briggsae] 7.0E-61
blast CAE69559 Hypothetical protein CBG15771 [Caenorhabditis briggsae] 3.0E-45
blast CAE57382 Hypothetical protein CBG00330 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503023.1 4 32-54,69-88,93-115,148-170
Y116A8C.23 4 32-54,69-88,93-115,148-170
SNAP00000004093 4 32-54,69-88,93-115,148-170
GENEFINDER00000004183 4 34-56,69-88,93-115,151-173
Sequence
Target Sequence 
>C. ELEGANS:186923_AT
gtggaagtcatatcaccttctccagtgatgacaatgcggctgttttgagtttcatatatt
ttatgtcaactcttctcgcttttttgtcaattatgtcacatgtcagtgggctactggtcc
cgctgtttttgttcagtggaaccggatcattcgtcctgtttttcctggtcaacatctcta
caatgcacactccacatgcggttaatgtttacaagcaactttgccagtcaaatattacca
aaatctattgtgaagctattgtggaagacaaaactgtgacaattgtcaagacttggatgc
tcatccttttcttcttgatcacttgtgtgacgattttgtttcagtttacacgaaatgatg
aatatgctcgccgtccgccacctccattccatccagctttctatccatatccgatgccac
gagaaaccccgattggtgcaacaaatattgatgagccgccaagatattcgacactcgaac
ccatgtcccctccaaaacccggctcatcaactgtgacgtcaccgcctcgttacagctact
gggaacgaacgttcggaagagctagaagtgctgcatctcagtgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAAGTCATATCACCTTCTCCAG 437 491 182 Antisense
CACATGTCAGTGGGCTACTGGTCCC 444 193 278 Antisense
GAACCGGATCATTCGTCCTGTTTTT 555 345 320 Antisense
TGTTTTTCCTGGTCAACATCTCTAC 582 561 338 Antisense
AATGCACACTCCACATGCGGTTAAT 470 165 363 Antisense
TCCTTTTCTTCTTGATCACTTGTGT 180 593 485 Antisense
GAAATGATGAATATGCTCGCCGTCC 370 361 533 Antisense
TCTATCCATATCCGATGCCACGAGA 309 615 581 Antisense
GCCACGAGAAACCCCGATTGGTGCA 222 279 597 Antisense
GAGCCGCCAAGATATTCGACACTCG 8 387 634 Antisense
TAGAAGTGCTGCATCTCAGTGCTCG 78 653 744 Antisense
Sequence Source Affymetrix Proprietary Database