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[186922_s_at]

Description H14E04.2A /REP_DB=WormBase Gene ID /WP=CE20966 /TR=Q9TYP5 /GB=AAD12809.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 69      4grp_high_8_8 > 51      6grp_highest_nonorm > 91      6grp_total > 49      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 295.8
(3)
P 		259.6
(1.9)
P 		267.7
(2.1)
P 		99.1
(-3)
A 		197
B 286.9
(1.5)
P 		358.7
(3)
P 		293.3
(1.6)
P 		76.1
(-3)
P 		283
C 280.9
(1.8)
P 		317.2
(3)
P 		288
(2)
P 		134.7
(-3)
A 		183
avr 287.9
(2.3) 		311.8
(3) 		283
(2.2) 		103.3
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 130.9
(-2.2)
P 		255.8
(0.3)
P 		90.8
(-3)
P 		237
(-0.1)
P 		247.1
(0.1)
P 		391.8
(3)
P 		301
B 225.6
(-1.1)
P 		208.1
(-2.1)
P 		191.4
(-3)
P 		227.1
(-1.1)
P 		301.7
(3)
P 		241.2
(-0.3)
P 		110
C 407.8
(3)
P 		203.4
(-1.4)
P 		191.1
(-1.7)
P 		129.2
(-3)
P 		318.5
(1.1)
P 		248.7
(-0.4)
P 		279
avr 254.8
(1.3) 		222.4
(-0.2) 		157.8
(-3) 		197.8
(-1.2) 		289.1
(2.8) 		293.9
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 107.7
(3)
P 		56.4
(-0.3)
P 		70
(0.6)
P 		14.5
(-3)
A 		93
B 91.5
(3)
P 		88.6
(2.8)
P 		68
(1.1)
P 		16.2
(-3)
P 		75
C 93
(2.4)
P 		91.2
(2.3)
P 		100.4
(3)
P 		22.7
(-3)
A 		78
avr 97.4
(3) 		78.7
(1.6) 		79.5
(1.7) 		17.8
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 24.1
(-2.7)
P 		91
(2.7)
P 		19.8
(-3)
P 		60.1
(0.2)
P 		74.6
(1.3)
P 		95.4
(3)
P 		76
B 78.5
(-0.5)
P 		69.3
(-1.2)
P 		46.5
(-3)
P 		60.2
(-1.9)
P 		122.6
(3)
P 		90
(0.4)
P 		76
C 151.1
(3)
P 		62.1
(-1.3)
P 		48.6
(-1.9)
P 		26
(-3)
P 		103.1
(0.7)
P 		83.3
(-0.3)
P 		125
avr 84.6
(1.5) 		74.1
(0.5) 		38.3
(-3) 		48.8
(-2) 		100.1
(3) 		89.6
(2) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186922_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7897
Sequence Type Exemplar sequence
Representative Public ID H14E04.2A NCBI
Target Description H14E04.2A /REP_DB=WormBase Gene ID /WP=CE20966 /TR=Q9TYP5 /GB=AAD12809.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065143(11), NM_171862(11), NM_065144(11), NM_181950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065143 NCBI Caenorhabditis elegans H14E04.2b (H14E04.2) mRNA, complete cds. 11/11 None
NM_171862 NCBI Caenorhabditis elegans H14E04.2c (H14E04.2) mRNA, complete cds. 11/11 None
NM_065144 NCBI Caenorhabditis elegans H14E04.2a (H14E04.2) mRNA, complete cds. 11/11 None
NM_181950 NCBI Caenorhabditis elegans H14E04.2d (H14E04.2) mRNA, complete cds. 11/11 None
SNAP00000039214 ENSEMBL cdna:SNAP chromosome:CEL140:III:2373300:2383987:1 11/11 None
GENEFINDER00000039219 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2376188:2384558:1 11/11 None
H14E04.2c ENSEMBL cdna:known chromosome:CEL140:III:2376178:2384558:1 gene:H14E04.2 11/11 None
H14E04.2a ENSEMBL cdna:known chromosome:CEL140:III:2376183:2384558:1 gene:H14E04.2 11/11 None
H14E04.2b ENSEMBL cdna:known chromosome:CEL140:III:2376188:2384818:1 gene:H14E04.2 11/11 None
H14E04.2d ENSEMBL cdna:known chromosome:CEL140:III:2376880:2384558:1 gene:H14E04.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2376187-2384558(+) 100.0 100.0
Public Domain and Genome References
Ensembl H14E04.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12814 Hypothetical protein H14E04.2b [Caenorhabditis elegans] ref|NP_497544.1| H14E04.2b [Caenorhabditis elegans] 0.0
blast AAD12809 Hypothetical protein H14E04.2a [Caenorhabditis elegans] ref|NP_497545.1| H14E04.2a [Caenorhabditis elegans] 0.0
blast AAL32228 Hypothetical protein H14E04.2c [Caenorhabditis elegans] ref|NP_741095.1| H14E04.2c [Caenorhabditis elegans] 0.0
blast AAN63406 Hypothetical protein H14E04.2d [Caenorhabditis elegans] ref|NP_871679.1| H14E04.2d [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186922_S_AT
gattaccggattcgccatcagaaactgggatgccgacgataaaaccatcgaaaaaattgt
cgaaaccggcggcgaggagcttctttccgcttggaactcggccaccgatgaagccatcgc
cctactgacgtcatcagctggtgacgtggaatggaaggctccgcccacttcgacagatgt
tctcgcgatgacggtctcgaagggaaatgtggtagtgatgccacatccgaatgccgacac
gaaaaccggaccggaaattcatttgggaaccgtcggcgccatgtctgctatgaagaaata
tgagaaatgggatggcgaagaggatagtttggctaaggtccgtgaaacatttgccgaatc
gttcggaattcgttgtattgacgccggcttcgattcggtcgtcggagcagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACCGGATTCGCCATCAGAAAC 443 429 1173 Antisense
TCGAAACCGGCGGCGAGGAGCTTCT 505 597 1232 Antisense
GAACTCGGCCACCGATGAAGCCATC 338 349 1266 Antisense
CCCACTTCGACAGATGTTCTCGCGA 215 259 1336 Antisense
TTCTCGCGATGACGGTCTCGAAGGG 54 691 1352 Antisense
GTAGTGATGCCACATCCGAATGCCG 642 435 1384 Antisense
TCATTTGGGAACCGTCGGCGCCATG 389 619 1431 Antisense
TCGGCGCCATGTCTGCTATGAAGAA 483 607 1445 Antisense
AGGTCCGTGAAACATTTGCCGAATC 4 57 1508 Antisense
AATTCGTTGTATTGACGCCGGCTTC 580 177 1539 Antisense
CTTCGATTCGGTCGTCGGAGCAGTC 33 215 1560 Antisense
Sequence Source Affymetrix Proprietary Database