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[186921_s_at]

Description Y53C10A.13 /REP_DB=WormBase Gene ID /WP=CE25392 /TR=Q9NAD1 /GB=CAB76750.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 17.7
(-2)
A 		17.1
(-2.1)
A 		2.1
(-3)
A 		98.8
(3)
P 		97
B 8.1
(-3)
A 		52.6
(3)
A 		35.2
(0.7)
A 		19.9
(-1.4)
A 		45
C 1.9
(-3)
A 		8.1
(-2.5)
A 		4.2
(-2.8)
A 		75.3
(3)
P 		73
avr 9.2
(-3) 		25.9
(-1.2) 		13.8
(-2.5) 		64.7
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 42.2
(1.9)
A 		9.4
(-2.2)
A 		3.1
(-3)
A 		42.1
(1.9)
A 		35.2
(1)
A 		50.7
(3)
A 		48
B 36.8
(3)
A 		20.6
(-3)
A 		30.5
(0.7)
P 		26.7
(-0.7)
A 		29.3
(0.2)
A 		28.4
(-0.1)
P 		16
C 17.5
(-0.6)
A 		29.1
(1.8)
A 		6.2
(-3)
A 		34.8
(3)
A 		19.9
(-0.1)
A 		26
(1.2)
P 		29
avr 32.2
(2.2) 		19.7
(-1.2) 		13.3
(-3) 		34.5
(2.9) 		28.1
(1.1) 		35
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.5
(-0.4)
A 		3.7
(-1.6)
A 		0.5
(-3)
A 		14.5
(3)
P 		14
B 2.6
(-3)
A 		13
(3)
A 		8.2
(0.2)
A 		4.2
(-2.1)
A 		10
C 0.6
(-3)
A 		2.3
(-2.2)
A 		1.5
(-2.6)
A 		12.7
(3)
P 		12
avr 3.2
(-3) 		6.3
(-0.5) 		3.4
(-2.8) 		10.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.8
(0.7)
A 		3.4
(-1.6)
A 		0.7
(-3)
A 		10.7
(2.2)
A 		10.6
(2.1)
A 		12.3
(3)
A 		12
B 12.8
(3)
A 		6.9
(-3)
A 		7.4
(-2.5)
P 		7.1
(-2.8)
A 		11.9
(2.1)
A 		10.6
(0.8)
P 		6
C 6.5
(1)
A 		8.9
(3)
A 		1.6
(-3)
A 		7
(1.4)
A 		6.4
(0.9)
A 		8.7
(2.8)
P 		7
avr 9
(1.8) 		6.4
(-0.4) 		3.2
(-3) 		8.3
(1.2) 		9.6
(2.3) 		10.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186921_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2290
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.13 NCBI
Target Description Y53C10A.13 /REP_DB=WormBase Gene ID /WP=CE25392 /TR=Q9NAD1 /GB=CAB76750.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000696 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12015033:12017747:1 11/11 None
Y53C10A.13 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12015033:12016162:1 gene:Y53C10A.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000687 3/11 Cross Hyb Matching Probes None
SNAP00000000688 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12014963-12016093(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53C10A.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 0.0
blast T27122 hypothetical protein Y53C10A.7 - Caenorhabditis elegans 7.0E-32
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.7E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-11
Sequence
Target Sequence 
>C. ELEGANS:186921_S_AT
ggtgtacttgtttcctacgacaatggatcttttattcactatcaacaagtttacgatgat
tgtgaaatgttcggacgaaaggagaaaaagaggttcttcaatgaaaatgctgtaaaaatg
gcgataaatgacgtcatcagagtgatgagtcatccgatgtcaaatgtgaaactctttcga
actggaattccgacaaagccggagatggaaagaagtagaagcacgggaaagcagtggaaa
agagcaaagattttgtgcgcaaatcgtggatttatggaagtttccatgaaacatctttgt
catttctcccgtgttgtcgtcaatcaagcgagaacttccatgcaaacggctattgagatc
agagatattctcttgaagtctacaagtattgagtatgtcgatttctgctcacgagacggt
gtcacgatcgatgcggttcgcgtttttattccagaaactgccaatgtgaatcaaaccacg
gattacgacaattttacattttccagctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTACTTGTTTCCTACGACAATG 710 491 241 Antisense
GACAATGGATCTTTTATTCACTATC 253 365 259 Antisense
GAAACTCTTTCGAACTGGAATTCCG 440 355 408 Antisense
GAAACATCTTTGTCATTTCTCCCGT 210 357 528 Antisense
TCCCGTGTTGTCGTCAATCAAGCGA 634 597 547 Antisense
GCGAGAACTTCCATGCAAACGGCTA 155 289 568 Antisense
GAGTATGTCGATTTCTGCTCACGAG 197 399 631 Antisense
TGCTCACGAGACGGTGTCACGATCG 539 579 646 Antisense
GTCACGATCGATGCGGTTCGCGTTT 119 457 661 Antisense
TCGCGTTTTTATTCCAGAAACTGCC 126 599 678 Antisense
GACAATTTTACATTTTCCAGCTCGA 32 365 727 Antisense
Sequence Source Affymetrix Proprietary Database