[Home] | [Total List]

[186920_s_at]

Description F37C12.13 /REP_DB=WormBase Gene ID /WP=CE26424 /TR=Q20128 /GB=AAC48298.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 75      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 715
1 2 3 4 range
A 713.6
(1)
P 		407
(-3)
P 		608.4
(-0.4)
P 		871.3
(3)
P 		464
B 516.5
(-2.7)
P 		515.9
(-2.7)
P 		481.2
(-3)
P 		1122
(3)
P 		641
C 713.1
(-0.8)
P 		532
(-3)
P 		648.3
(-1.6)
P 		1015.7
(3)
P 		484
avr 647.7
(-1.1) 		485
(-3) 		579.3
(-1.9) 		1003
(3) 		518

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 447.8
(-2.9)
P 		657.9
(1.3)
P 		442.4
(-3)
P 		742.3
(3)
P 		506.3
(-1.7)
P 		653
(1.2)
P 		300
B 570.6
(0.5)
P 		555.6
(-0.5)
P 		564.6
(0.1)
P 		518.3
(-3)
P 		528.8
(-2.3)
P 		609.1
(3)
P 		91
C 672.1
(0.9)
P 		576.2
(-2.5)
P 		718.3
(2.5)
P 		583.1
(-2.2)
P 		560.8
(-3)
P 		731.5
(3)
P 		171
avr 563.5
(-1.6) 		596.6
(-0.1) 		575.1
(-1) 		614.6
(0.7) 		532
(-3) 		664.5
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 259.8
(3)
P 		88.3
(-3)
P 		159
(-0.5)
P 		127.5
(-1.6)
P 		172
B 164.7
(-0.5)
P 		127.4
(-2.3)
P 		111.5
(-3)
P 		239.1
(3)
P 		128
C 236
(3)
P 		153
(-3)
P 		225.9
(2.3)
P 		171.3
(-1.7)
P 		83
avr 220.2
(3) 		122.9
(-3) 		165.5
(-0.4) 		179.3
(0.5) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 82.5
(-3)
P 		234
(3)
P 		96.3
(-2.5)
P 		188.3
(1.2)
P 		152.8
(-0.2)
P 		159
(0)
P 		152
B 198.5
(1.1)
P 		184.9
(0.2)
P 		137.1
(-3)
P 		137.3
(-3)
P 		214.9
(2.2)
P 		227.1
(3)
P 		90
C 249.1
(3)
P 		175.8
(-0.3)
P 		182.8
(-0)
P 		117.3
(-3)
P 		181.5
(-0.1)
P 		244.9
(2.8)
P 		132
avr 176.7
(0.2) 		198.2
(2) 		138.7
(-3) 		147.6
(-2.3) 		183.1
(0.7) 		210.3
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186920_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7893
Sequence Type Exemplar sequence
Representative Public ID F37C12.13 NCBI
Target Description F37C12.13 /REP_DB=WormBase Gene ID /WP=CE26424 /TR=Q20128 /GB=AAC48298.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171186 NCBI Caenorhabditis elegans F37C12.13a (F37C12.13) mRNA, complete cds. 11/11 None
F37C12.13a.1 ENSEMBL cdna:known chromosome:CEL140:III:7196148:7197990:-1 gene:F37C12.13 11/11 None
F37C12.13a.2 ENSEMBL cdna:known chromosome:CEL140:III:7196183:7197992:-1 gene:F37C12.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176012 2 1 NM_171186 186920_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7196250-7197983(-) 100.0 100.0
Public Domain and Genome References
Ensembl F37C12.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48298 Hypothetical protein F37C12.13a [Caenorhabditis elegans] ref|NP_741217.1| F37C12.13a [Caenorhabditis elegans] 0.0
blast CAE70152 Hypothetical protein CBG16619 [Caenorhabditis briggsae] 1.0E-175
blast XP_788833 PREDICTED: similar to exosome component 9 [Strongylocentrotus purpuratus] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 1.8E-19
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 6.6E-44
Sequence
Target Sequence 
>C. ELEGANS:186920_S_AT
ataagcgtcgcgaagtttgtgccctccatcagagcacaaatctcattttatcaacaaagc
agatcgagcgttgcgtaaagttggcaatggctcgtgcggaagcgctcactgcagttgtta
gtgacgtcattaaacaggatcaaattgaaagaagcgcattcaaacgtccggatggttttg
caatcaccactccatcactcattctcacagctggaactacagcttctcgtcaaattcgtg
ctcctgtaatcaaaactgagcctgagtcgttcacacagagaagtctctaccaaccaagtg
ttattcttaatgagaatccattgagtgtcggatcagtcaagcaagaagatgttgatgagg
agacattgctcgccgagcaacttacaactattcagaatagtgttggacaagttgaagtga
ctgagaagcagactgttgcagtttccagccgaaagcgcgaagtagaggaagtcaacgatc
ttcttgacggactcgacgatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGCGTCGCGAAGTTTGTGCCCT 347 25 689 Antisense
GTTGGCAATGGCTCGTGCGGAAGCG 638 435 768 Antisense
AAGCGCATTCAAACGTCCGGATGGT 504 145 840 Antisense
ATGGTTTTGCAATCACCACTCCATC 20 51 860 Antisense
ATCACTCATTCTCACAGCTGGAACT 114 29 882 Antisense
GGAACTACAGCTTCTCGTCAAATTC 633 529 901 Antisense
GTCAAATTCGTGCTCCTGTAATCAA 275 465 917 Antisense
AACTGAGCCTGAGTCGTTCACACAG 233 141 942 Antisense
GATGAGGAGACATTGCTCGCCGAGC 503 411 1042 Antisense
CTCGCCGAGCAACTTACAACTATTC 699 233 1057 Antisense
TCTTCTTGACGGACTCGACGATGAC 209 617 1167 Antisense
Sequence Source Affymetrix Proprietary Database