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[186919_at]

Description Y113G7A.14 /REP_DB=WormBase Gene ID /WP=CE23283 /TR=Q9U2Y4 /GB=CAB60484.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      4grp_high_8_8 > 35      6grp_total > 22      4grp_total > 46      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 113.8
(-1.8)
P 		160.8
(3)
P 		101.7
(-3)
A 		126.5
(-0.5)
P 		59
B 215
(3)
P 		136.6
(-1.4)
A 		108.9
(-3)
P 		115.7
(-2.6)
P 		106
C 178.1
(3)
P 		78.1
(-3)
A 		104
(-1.4)
P 		107.4
(-1.2)
P 		100
avr 169
(3) 		125.2
(-1.1) 		104.9
(-3) 		116.5
(-1.9) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 245.1
(3)
P 		171
(0.2)
P 		188.9
(0.9)
P 		137.2
(-1.1)
P 		104.3
(-2.3)
P 		85.7
(-3)
M 		159
B 129.3
(-0.2)
P 		193.2
(3)
P 		157
(1.2)
P 		181.5
(2.4)
P 		96.6
(-1.9)
P 		74.7
(-3)
M 		119
C 135.1
(-0.5)
P 		219.1
(3)
P 		205.9
(2.5)
P 		75.1
(-3)
A 		100.6
(-1.9)
A 		94.9
(-2.2)
P 		144
avr 169.8
(1.6) 		194.4
(3) 		183.9
(2.4) 		131.3
(-0.5) 		100.5
(-2.2) 		85.1
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 41.4
(3)
P 		34.9
(1.3)
P 		26.6
(-0.9)
A 		18.5
(-3)
P 		23
B 68.6
(3)
P 		33.7
(-1.8)
A 		25.2
(-2.9)
P 		24.7
(-3)
P 		44
C 59
(3)
P 		22.4
(-2.4)
A 		36.3
(-0.3)
P 		18.1
(-3)
P 		41
avr 56.3
(3) 		30.3
(-1.3) 		29.4
(-1.5) 		20.4
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 45.2
(0.7)
P 		60.8
(3)
P 		41.1
(0)
P 		34.8
(-0.9)
P 		31.5
(-1.4)
P 		20.9
(-3)
M 		40
B 45
(-0.2)
P 		64.3
(3)
P 		38.1
(-1.3)
P 		48.1
(0.3)
P 		39.2
(-1.1)
P 		27.8
(-3)
M 		37
C 50.1
(1.1)
P 		66.8
(3)
P 		52.4
(1.3)
P 		15.1
(-3)
A 		32.5
(-1)
A 		31.8
(-1.1)
P 		52
avr 46.8
(0.2) 		64
(3) 		43.9
(-0.2) 		32.7
(-2) 		34.4
(-1.8) 		26.8
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14081
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.14 NCBI
Target Description Y113G7A.14 /REP_DB=WormBase Gene ID /WP=CE23283 /TR=Q9U2Y4 /GB=CAB60484.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075480 NCBI Caenorhabditis elegans Y113G7A.14 (Y113G7A.14) mRNA, complete cds. 11/11 None
GENEFINDER00000016731 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20133969:20136440:-1 11/11 None
Y113G7A.14 ENSEMBL cdna:known chromosome:CEL140:V:20133969:20136440:-1 gene:Y113G7A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20133968-20136440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7A.14
Entrez Gene 190962 Entrez gene
SwissProt Q9U2Y4 EMBL-EBI
WormBase CE23283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60484 Hypothetical protein Y113G7A.14 [Caenorhabditis elegans] ref|NP_507881.1| Y113G7A.14 [Caenorhabditis elegans] 5.0E-96
blast CAE67439 Hypothetical protein CBG12931 [Caenorhabditis briggsae] 5.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507881.1 1 66-88
Y113G7A.14 1 66-88
GENEFINDER00000016731 1 66-88
Sequence
Target Sequence 
>C. ELEGANS:186919_AT
tacacttccctgatcgacgatatagaaaatctgacagtacccacttcctccgacgaccca
tttccctccccggcagacccttttgaggactatgtgaatgtgacggattatacaattatt
gagataaaaaataaaaatggaaccgagtctgtaaggcttttcgagtattttaatgtgaac
ccattcctggtctacgcgatatgtggaattgcagccgttattgtaattattgctattata
tctttaattttatggcttaaaaaccataaaacacgagttataaatgagacaactgatccc
gtgctgacctccagttatcaggatggaaagggatgcttaagctgctgctgcccggcaaaa
ccacagattactgtagaccagcggcaaaactcggcgagcaacttggaatcctacgggcgg
cccccactgccgcagtccgcttactttatggatcggcctaagagtcaagagtccttcacc
attgacacctccaacctggcaatgtacatcgatggaatcgaagaaatcccgaatcgagat
cctccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACTTCCCTGATCGACGATATAG 584 639 22 Antisense
GAAAATCTGACAGTACCCACTTCCT 680 353 46 Antisense
CCATTCCTGGTCTACGCGATATGTG 22 271 202 Antisense
AGGGATGCTTAAGCTGCTGCTGCCC 74 59 350 Antisense
TGCCCGGCAAAACCACAGATTACTG 616 583 370 Antisense
GTAGACCAGCGGCAAAACTCGGCGA 340 421 394 Antisense
AGCAACTTGGAATCCTACGGGCGGC 193 1 418 Antisense
CCGCAGTCCGCTTACTTTATGGATC 243 261 451 Antisense
TCAAGAGTCCTTCACCATTGACACC 640 631 486 Antisense
ACACCTCCAACCTGGCAATGTACAT 462 109 506 Antisense
GAAATCCCGAATCGAGATCCTCCGA 14 361 544 Antisense
Sequence Source Affymetrix Proprietary Database