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[186918_at]

Description PAR2.1 /REP_DB=WormBase Gene ID /WP=CE00768 /TR=SW:P34496 /GB=AAA50616.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 57      6grp_total > 65      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2535
1 2 3 4 range
A 2070.8
(-2)
P 		3166.9
(0.6)
P 		4197.3
(3)
P 		1662.4
(-3)
P 		2535
B 1804.5
(-3)
P 		3567.3
(2.2)
P 		3819.2
(3)
P 		2025.6
(-2.3)
P 		2015
C 2361.7
(-2.3)
P 		3058.3
(-0.1)
P 		4068.4
(3)
P 		2140.6
(-3)
P 		1928
avr 2079
(-2.6) 		3264.2
(0.8) 		4028.3
(3) 		1942.9
(-3) 		2085

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1464
1 2 3 4 5 6 range
A 1540.5
(-3)
P 		2160.1
(0.6)
P 		2571.5
(3)
P 		2045.2
(-0.1)
P 		2202
(0.8)
P 		2532.5
(2.8)
P 		1031
B 2138
(-2.7)
P 		2346.8
(-1.1)
P 		2661
(1.3)
P 		2103.5
(-3)
P 		2824.7
(2.6)
P 		2875.2
(3)
P 		772
C 1773.5
(-3)
P 		2222
(-0.8)
P 		2309.3
(-0.4)
P 		2549.7
(0.8)
P 		2102.3
(-1.4)
P 		3004.1
(3)
P 		1231
avr 1817.3
(-3) 		2243
(-0.4) 		2513.9
(1.2) 		2232.8
(-0.5) 		2376.3
(0.4) 		2803.9
(3) 		987
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1175
1 2 3 4 range
A 754
(0.6)
P 		687.4
(0.1)
P 		1097.3
(3)
P 		243.3
(-3)
P 		854
B 575.5
(-1.1)
P 		881
(2.9)
P 		885
(3)
P 		431.7
(-3)
P 		453
C 781.8
(-0.6)
P 		879.3
(-0.1)
P 		1418
(3)
P 		360.9
(-3)
P 		1057
avr 703.8
(-0.3) 		815.9
(0.6) 		1133.4
(3) 		345.3
(-3) 		788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 864
1 2 3 4 5 6 range
A 284
(-3)
P 		768.3
(3)
P 		560
(0.4)
P 		518.7
(-0.1)
P 		664.5
(1.7)
P 		616.6
(1.1)
P 		484
B 743.9
(-1.1)
P 		781.1
(-0.7)
P 		646.2
(-2.1)
P 		557.1
(-3)
P 		1147.7
(3)
P 		1072.1
(2.2)
P 		591
C 657.4
(-1.2)
P 		678
(-1)
P 		587.8
(-2.1)
P 		512.7
(-3)
P 		680.3
(-1)
P 		1005.7
(3)
P 		493
avr 561.8
(-2.5) 		742.5
(0.5) 		598
(-1.9) 		529.5
(-3) 		830.8
(1.9) 		898.1
(3) 		369
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7889
Sequence Type Exemplar sequence
Representative Public ID PAR2.1 NCBI
Target Description PAR2.1 /REP_DB=WormBase Gene ID /WP=CE00768 /TR=SW:P34496 /GB=AAA50616.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066534 NCBI Caenorhabditis elegans PAR2.1 (PAR2.1) mRNA, complete cds. 11/11 None
PAR2.1.2 ENSEMBL cdna:known chromosome:CEL140:III:8768211:8769141:1 gene:PAR2.1 11/11 None
PAR2.1.1 ENSEMBL cdna:known chromosome:CEL140:III:8768213:8769122:1 gene:PAR2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027077 2/11 Cross Hyb Matching Probes None
SNAP00000016999 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017004 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8768211-8769051(+) 99.03 100.0
Public Domain and Genome References
Gene Title
Ensembl PAR2.1
Entrez Gene 187502 Entrez gene
SwissProt P34496 EMBL-EBI
WormBase CE00768 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3697 single-stranded DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50616 Hypothetical protein PAR2.1 [Caenorhabditis elegans] ref|NP_498935.1| PAR2.1 [Caenorhabditis elegans] sp|P34496|YNA1_CAEEL Hypothetical protein PAR2.1 in chromosome III 8.0E-93
blast CAE62750 Hypothetical protein CBG06914 [Caenorhabditis briggsae] 9.0E-73
blast S44839 K02D10.5 protein - Caenorhabditis elegans (fragment) 6.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000424 EMBL-EBI Single-strand binding protein 1.1E-32
Sequence
Target Sequence 
>C. ELEGANS:186918_AT
taccgtccgctgtatgtcattgacatccaaaatggctgctgagcaaccgagcaagcaaga
ggttgatgacttgttcgctgaaaaaccacaacatcataacccagaacaaagacggcatgc
atacagtgtgaataaagtggaactagtcggaggagtcgccttggatccattgtacaagac
tggaaggaacggaaaaccttacctcatcttcaatatcatcaccaactcgtacttcaagca
gcaagacggaactactctcgatcaaactgaacgtcacgccgtttcagttttcggaaagca
agccgaaatcctttcaaaaaccatcaagaaaggatcccgtcttatggttcaggggagact
tcattattctggaggacagaaggacgaacaaggaaaccgtacacaacgcaacacctacat
catcgctcaaactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGTCCGCTGTATGTCATTGACA 74 651 45 Antisense
TGGCTGCTGAGCAACCGAGCAAGCA 79 545 77 Antisense
AGAGGTTGATGACTTGTTCGCTGAA 273 69 102 Antisense
AAGACGGCATGCATACAGTGTGAAT 379 153 153 Antisense
AGTCGCCTTGGATCCATTGTACAAG 456 59 198 Antisense
AACCTTACCTCATCTTCAATATCAT 464 147 239 Antisense
ATATCATCACCAACTCGTACTTCAA 151 21 257 Antisense
GCAAGACGGAACTACTCTCGATCAA 635 319 285 Antisense
TGAACGTCACGCCGTTTCAGTTTTC 125 573 312 Antisense
GAAAGGATCCCGTCTTATGGTTCAG 377 359 372 Antisense
ACACCTACATCATCGCTCAAACTGT 2 111 455 Antisense
Sequence Source Affymetrix Proprietary Database