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[186916_at]

Description Y116A8C.32 /REP_DB=WormBase Gene ID /WP=CE28108 /TR=Q9U2U1 /GB=CAB55136.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 37.5
(-2.3)
A 		67.9
(0.8)
A 		30.8
(-3)
A 		89.8
(3)
A 		59
B 54.8
(0.1)
A 		55.8
(0.2)
A 		15.1
(-3)
A 		92.1
(3)
P 		77
C 50.5
(-3)
P 		78.4
(1)
A 		59.6
(-1.7)
A 		92.3
(3)
P 		42
avr 47.6
(-1.7) 		67.4
(0.4) 		35.2
(-3) 		91.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 9.8
(-2.8)
A 		41.4
(1.2)
A 		15.2
(-2.1)
A 		42.4
(1.4)
A 		55.3
(3)
A 		8.3
(-3)
A 		47
B 23.2
(-1.6)
A 		11.5
(-3)
A 		61.6
(3)
A 		22.8
(-1.6)
A 		18.1
(-2.2)
A 		27
(-1.1)
A 		50
C 28.9
(-1.1)
A 		54.7
(3)
P 		19
(-2.7)
A 		17
(-3)
A 		35.6
(-0)
A 		24.9
(-1.7)
A 		38
avr 20.6
(-2.8) 		35.9
(2.9) 		31.9
(1.4) 		27.4
(-0.3) 		36.3
(3) 		20.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.7
(2.1)
A 		14.7
(3)
A 		8
(-3)
A 		13.1
(1.6)
A 		7
B 17.5
(2.2)
A 		13.8
(0.8)
A 		3.5
(-3)
A 		19.6
(3)
P 		16
C 16.7
(-2)
P 		22.5
(3)
A 		20.8
(1.5)
A 		15.6
(-3)
P 		7
avr 16
(2) 		17
(3) 		10.8
(-3) 		16.1
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-3)
A 		14.7
(2.2)
A 		3.3
(-2.4)
A 		10.8
(0.6)
A 		16.7
(3)
A 		2
(-2.9)
A 		15
B 8.1
(-0.7)
A 		3.8
(-3)
A 		15
(3)
A 		6.1
(-1.8)
A 		7.4
(-1.1)
A 		10.1
(0.4)
A 		11
C 10.7
(0.3)
A 		16.7
(3)
P 		4.8
(-2.4)
A 		3.4
(-3)
A 		11.5
(0.7)
A 		8.3
(-0.8)
A 		13
avr 6.9
(-2.9) 		11.7
(2.8) 		7.7
(-1.9) 		6.8
(-3) 		11.9
(3) 		6.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9276
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.32 NCBI
Target Description Y116A8C.32 /REP_DB=WormBase Gene ID /WP=CE28108 /TR=Q9U2U1 /GB=CAB55136.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070632 NCBI Caenorhabditis elegans Y116A8C.32 (Y116A8C.32) mRNA, complete cds. 11/11 None
SNAP00000004103 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17103079:17110938:-1 10/11 None
GENEFINDER00000004161 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17104501:17111405:-1 11/11 None
Y116A8C.32 ENSEMBL cdna:known chromosome:CEL140:IV:17104161:17110938:-1 gene:Y116A8C.32 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17104506-17110944(-) 93.44 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.32
Entrez Gene 178486 Entrez gene
SwissProt Q9U2U1 EMBL-EBI
WormBase CE28108 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248452_AT splicing factor-related at
CANINE:1592595_S_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFA.1546.1.A1_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21976.1.S1_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21976.1.S1_S_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21982.1.S1_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21982.1.S1_S_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21986.1.S1_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21986.1.S1_X_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
CANINE_2:CFAAFFX.21997.1.S1_AT similar to Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) cfa
DROSOPHILA_2:1631141_AT Splicing factor 1 dm
DROSGENOME1:153361_AT Splicing factor 1 dm
HG-U133_PLUS_2:208313_S_AT splicing factor 1 hs
HG-U133A:208313_S_AT splicing factor 1 hs
HG-FOCUS:208313_S_AT splicing factor 1 hs
HG-U133A_2:208313_S_AT splicing factor 1 hs
HG-U95AV2:41204_S_AT splicing factor 1 hs
HG-U133A:210172_AT splicing factor 1 hs
HG-U133_PLUS_2:210172_AT splicing factor 1 hs
HG-U133A_2:210172_AT splicing factor 1 hs
HUGENEFL:Y08765_S_AT splicing factor 1 hs
HUGENEFL:Y08766_S_AT splicing factor 1 hs
HUGENEFL:L49380_AT splicing factor 1 hs
U133_X3P:G785998_3P_AT splicing factor 1 hs
U133_X3P:G4759339_3P_A_AT splicing factor 1 hs
U133_X3P:HS2.382653.1.S1_3P_S_AT splicing factor 1 hs
U133_X3P:HS2.382653.1.S1_3P_AT splicing factor 1 hs
HG-U133_PLUS_2:1555749_AT splicing factor 1 hs
HG-U95AV2:35439_AT splicing factor 1 hs
HG-U95AV2:35440_G_AT splicing factor 1 hs
HG-U95AV2:41203_AT splicing factor 1 hs
U133_X3P:HS2.319806.1.S1_3P_S_AT Splicing factor 1 hs
HG-U133_PLUS_2:1563426_A_AT Splicing factor 1 hs
HG-U95C:65062_AT Splicing factor 1 hs
HU35KSUBC:RC_H91057_AT Splicing factor 1 hs
MOUSE430_2:1422321_A_AT zinc finger protein 162 mm
MOE430A:1422321_A_AT zinc finger protein 162 mm
MOUSE430A_2:1422321_A_AT zinc finger protein 162 mm
MOE430A:1423751_AT zinc finger protein 162 mm
MOUSE430A_2:1423751_AT zinc finger protein 162 mm
MOUSE430_2:1423751_AT zinc finger protein 162 mm
MG-U74AV2:99567_AT zinc finger protein 162 mm
MU11KSUBB:Y12838_S_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOE430A:1423750_A_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOUSE430A_2:1423750_A_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOUSE430_2:1423750_A_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOE430B:1459765_S_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOUSE430_2:1459765_S_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MG-U74CV2:136241_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOE430B:1459766_X_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MOUSE430_2:1459766_X_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MU19KSUBA:TC15712_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MU19KSUBA:TC15712_G_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MU19KSUBA:TC22723_I_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
MU19KSUBA:TC25590_S_AT Zinc finger protein 162, mRNA (cDNA clone MGC:7095 IMAGE:3157495) mm
YEAST_2:1779193_AT Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55136 Hypothetical protein Y116A8C.32 [Caenorhabditis elegans] emb|CAB64866.1| SF1 protein [Caenorhabditis elegans] ref|NP_503033.1| Y116A8C.32 [Caenorhabditis elegans] 0.0
blast CAE57457 Hypothetical protein CBG00421 [Caenorhabditis briggsae] 0.0
blast CAB64857 SF1 protein [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 4.9E-6
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 9.7E-7
Pfam IPR004087 EMBL-EBI KH 4.9E-6
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 9.7E-7
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 1.1E-39
Sequence
Target Sequence 
>C. ELEGANS:186916_AT
aaactccggctgctggagctggagccggaggaggaggtggaggacatgttgcatcagctg
gtggtggaatttcagcaatgactggagcaggaggagaagctcctggtggtggagctggag
gacgaggtggtggagctcatggaggagctggaagaggtggaggatatcaaggtggacgtg
gaggaggacgtggattccagaatccacgggatttatttggaccaccgaaaggagaagaag
agcagcaacagcaggcgaatgcttcgatgcagcatggatattatgatcactatcaacaat
acgcctatcctaatcaatatcaacaaccttatggtgcacctgcacctccaggaggatcag
cttacggtcaccaacagcagcagcagcagcagcaacaacaagactacagtgatttctaca
caagcccaggagcccgtggaggagctggagccaaagccaacaaaggatggtacggaagtg
gtggcgggtcgtctatgccgatgcctgtacctccaccaggcggcctaggcggtttcatgc
ctccaccacctccaccaccaccaatgcctggagatttgtcgtcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCCGGCTGCTGGAGCTGGAGC 614 127 1526 Antisense
GGACATGTTGCATCAGCTGGTGGTG 572 519 1567 Antisense
AGCAGGCGAATGCTTCGATGCAGCA 21 79 1775 Antisense
ATCACTATCAACAATACGCCTATCC 585 27 1811 Antisense
TACGCCTATCCTAATCAATATCAAC 589 649 1825 Antisense
CAACAACCTTATGGTGCACCTGCAC 261 189 1846 Antisense
GCACCTGCACCTCCAGGAGGATCAG 82 315 1861 Antisense
TCAGCTTACGGTCACCAACAGCAGC 707 623 1882 Antisense
GTGATTTCTACACAAGCCCAGGAGC 273 485 1934 Antisense
GTACGGAAGTGGTGGCGGGTCGTCT 666 455 1995 Antisense
ATGCCTGGAGATTTGTCGTCACTTT 569 41 2089 Antisense
Sequence Source Affymetrix Proprietary Database