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[186915_at]

Description Y18D10A.17 /REP_DB=WormBase Gene ID /WP=CE21413 /TR=Q9XW17 /GB=CAA22317.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 93      6grp_total > 99      4grp_total > 50      6grp_highest_sub > In      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 397.3
(-3)
P 		479.1
(2.8)
P 		481.8
(3)
P 		403.6
(-2.6)
P 		85
B 470.5
(-3)
P 		477.9
(-1.7)
P 		504.5
(3)
P 		485
(-0.4)
P 		34
C 444.9
(-2.6)
P 		570.5
(3)
P 		467.9
(-1.6)
P 		436.5
(-3)
P 		134
avr 437.6
(-3) 		509.2
(3) 		484.7
(0.9) 		441.7
(-2.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 242.8
(-2.6)
P 		372.4
(-0.6)
P 		218.4
(-3)
P 		343.4
(-1.1)
P 		560.6
(2.2)
P 		610.6
(3)
P 		392
B 328.8
(-2.4)
P 		325.7
(-2.4)
P 		311.5
(-2.7)
P 		293.2
(-3)
P 		630.9
(3)
P 		578.7
(2.1)
P 		338
C 304.3
(-2.7)
P 		328.5
(-2.4)
P 		307.3
(-2.7)
P 		285.1
(-3)
P 		728.9
(3)
P 		663.9
(2.1)
P 		444
avr 292
(-2.8) 		342.2
(-2) 		279.1
(-3) 		307.2
(-2.5) 		640.1
(3) 		617.7
(2.6) 		361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 144.7
(3)
P 		104
(0.1)
P 		125.9
(1.7)
P 		59.1
(-3)
P 		86
B 150
(3)
P 		118
(-1.1)
P 		116.9
(-1.3)
P 		103.3
(-3)
P 		47
C 147.3
(1.9)
P 		164
(3)
P 		163.1
(2.9)
P 		73.6
(-3)
P 		90
avr 147.3
(3) 		128.7
(1.4) 		135.3
(2) 		78.7
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 44.8
(-3)
P 		132.5
(1.2)
P 		47.6
(-2.9)
P 		87.1
(-1)
P 		169.2
(3)
P 		148.7
(2)
P 		124
B 114.4
(-1.7)
P 		108.4
(-1.9)
P 		75.6
(-3)
P 		77.7
(-2.9)
P 		256.3
(3)
P 		215.8
(1.7)
P 		181
C 112.8
(-1.1)
P 		100.2
(-1.6)
P 		78.2
(-2.3)
P 		57.3
(-3)
P 		235.9
(3)
P 		222.2
(2.5)
P 		179
avr 90.7
(-2.1) 		113.7
(-1.2) 		67.1
(-3) 		74
(-2.7) 		220.5
(3) 		195.6
(2) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2327
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.17 NCBI
Target Description Y18D10A.17 /REP_DB=WormBase Gene ID /WP=CE21413 /TR=Q9XW17 /GB=CAA22317.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060853 NCBI Caenorhabditis elegans Cytokinesis, Apoptosis, RNA-associated family member (car-1) (car-1) mRNA, complete cds. 11/11 None
GENEFINDER00000000439 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12912597:12913768:1 11/11 None
SNAP00000000426 ENSEMBL cdna:SNAP chromosome:CEL140:I:12912893:12913768:1 11/11 None
Y18D10A.17.2 ENSEMBL cdna:known chromosome:CEL140:I:12912584:12914349:1 gene:Y18D10A.17 11/11 None
Y18D10A.17.1 ENSEMBL cdna:known chromosome:CEL140:I:12912591:12914349:1 gene:Y18D10A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12912527-12913699(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol car-1
Ensembl Y18D10A.17
Entrez Gene 173158 Entrez gene
SwissProt Q9XW17 EMBL-EBI
WormBase CE21413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22317 Hypothetical protein Y18D10A.17 [Caenorhabditis elegans] ref|NP_493254.1| Cytokinesis, Apoptosis, RNA-associated family member (car-1) [Caenorhabditis elegans] 1.0E-144
blast CAE63508 Hypothetical protein CBG07987 [Caenorhabditis briggsae] 1.0E-131
blast CAA22317 Hypothetical protein Y18D10A.17 [Caenorhabditis elegans] ref|NP_493254.1| Cytokinesis, Apoptosis, RNA-associated family member (car-1) [Caenorhabditis elegans] 1.0E-96
blast CAE63508 Hypothetical protein CBG07987 [Caenorhabditis briggsae] 3.0E-83
Sequence
Target Sequence 
>C. ELEGANS:186915_AT
aaccgtggatacaacaactaccgcggaggattcgctggcggatacaacaaccaaagaggg
cacaacaattatggagttcctcgagttaatcaccgcgaaaagctgaagttcgaatcggac
tttgacttcgagaaggccaatgagaagttccaagaagttctcgtcgacaaccttgagaag
ctcaacattgaggataaggccgagccagaagttgaggagaagaaggatgctgccttctac
gacaagaagacttcattctttgacaacatcagctgtgaatcactggagaaagccgaagga
aagactggacggccagattggaagaaggagagagaaacgaatcaggagacgttcggacac
aacgcagtgcgttcgttgaactaccgtcgtggattcggaggacgaggacgtggtggaaac
cgcggatatggaggttacaacaacggataccagcatcaacaccagcaccgtggaggatac
aatggaggttatcgtcagaacaacggtggataccgtcgtggtggatatgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGTGGATACAACAACTACCGCG 457 147 460 Antisense
CAACTACCGCGGAGGATTCGCTGGC 172 189 474 Antisense
TGGAGTTCCTCGAGTTAATCACCGC 529 549 531 Antisense
GAAGGATGCTGCCTTCTACGACAAG 21 335 681 Antisense
GACTTCATTCTTTGACAACATCAGC 621 371 708 Antisense
GACGTTCGGACACAACGCAGTGCGT 46 377 807 Antisense
GCAGTGCGTTCGTTGAACTACCGTC 198 311 823 Antisense
GAACTACCGTCGTGGATTCGGAGGA 40 345 837 Antisense
CAACGGATACCAGCATCAACACCAG 11 187 900 Antisense
TCAACACCAGCACCGTGGAGGATAC 596 629 915 Antisense
GATACCGTCGTGGTGGATATGCTCC 338 425 968 Antisense
Sequence Source Affymetrix Proprietary Database