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[186914_s_at]

Description Y116A8C.19 /REP_DB=WormBase Gene ID /WP=CE23328 /TR=Q9U2V2 /GB=CAB55125.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 11.9
(-3)
A 		14.7
(-2.7)
A 		24.8
(-1.8)
A 		74.2
(3)
A 		62
B 18
(-2.3)
A 		58.8
(3)
A 		12.2
(-3)
A 		36.9
(0.2)
A 		47
C 38.1
(-0.8)
A 		61.8
(0.8)
A 		4.7
(-3)
A 		94
(3)
A 		89
avr 22.7
(-2) 		45.1
(0.4) 		13.9
(-3) 		68.4
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 32.1
(2.1)
A 		29.1
(1.4)
A 		21.1
(-0.3)
A 		8.5
(-3)
A 		8.3
(-3)
A 		36.4
(3)
A 		28
B 5.9
(-3)
A 		7.3
(-2.8)
A 		35.2
(2.2)
A 		39.6
(3)
A 		7.7
(-2.7)
A 		39.6
(3)
A 		34
C 9
(-1.8)
A 		25.7
(3)
A 		4.8
(-3)
A 		22.9
(2.2)
A 		7.4
(-2.3)
A 		13.1
(-0.6)
A 		21
avr 15.7
(-0.8) 		20.7
(0.5) 		20.4
(0.5) 		23.7
(1.4) 		7.8
(-3) 		29.7
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.3
(-2.1)
A 		3.2
(-3)
A 		6.5
(-0.4)
A 		10.9
(3)
A 		8
B 5.8
(-1.5)
A 		14.5
(3)
A 		2.8
(-3)
A 		7.9
(-0.4)
A 		12
C 12.6
(1.1)
A 		17.8
(3)
A 		1.7
(-3)
A 		15.9
(2.3)
A 		16
avr 7.6
(-0.1) 		11.8
(3) 		3.7
(-3) 		11.6
(2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.9
(-0.2)
A 		10.3
(3)
A 		4.6
(-1.2)
A 		2.1
(-3)
A 		2.5
(-2.7)
A 		8.9
(2)
A 		8
B 2.1
(-3)
A 		2.4
(-2.9)
A 		8.5
(0)
A 		10.5
(1)
A 		3.1
(-2.5)
A 		14.8
(3)
A 		13
C 3.4
(-1)
A 		7.8
(3)
A 		1.2
(-3)
A 		4.6
(0.1)
A 		2.4
(-1.9)
A 		4.4
(-0.1)
A 		7
avr 3.8
(-2) 		6.8
(0.7) 		4.8
(-1.1) 		5.7
(-0.3) 		2.7
(-3) 		9.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10201
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.19 NCBI
Target Description Y116A8C.19 /REP_DB=WormBase Gene ID /WP=CE23328 /TR=Q9U2V2 /GB=CAB55125.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070618 NCBI Caenorhabditis elegans Y116A8C.19 (Y116A8C.19) mRNA, complete cds. 11/11 None
SNAP00000004090 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17039012:17039602:-1 11/11 None
GENEFINDER00000004195 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17039012:17039602:-1 11/11 None
Y116A8C.19 ENSEMBL cdna:known chromosome:CEL140:IV:17039012:17039602:-1 gene:Y116A8C.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17039017-17039608(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.19
Entrez Gene 178477 Entrez gene
SwissProt Q9U2V2 EMBL-EBI
WormBase CE23328 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55125 Hypothetical protein Y116A8C.19 [Caenorhabditis elegans] ref|NP_503019.1| Y116A8C.19 [Caenorhabditis elegans] 1.0E-109
blast CAB05147 Hypothetical protein C35D6.4 [Caenorhabditis elegans] ref|NP_502949.1| C35D6.4 [Caenorhabditis elegans] 3.0E-68
blast CAB05193 Hypothetical protein F38C2.7 [Caenorhabditis elegans] ref|NP_502930.1| F38C2.7 [Caenorhabditis elegans] 4.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.1E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.9E-14
Sequence
Target Sequence 
>C. ELEGANS:186914_S_AT
atgtctccggaatctagcaaccaaacaacatccctctccagtttccttctgaaatgtgct
ttcccagacggaactgttcctattaatattgctcctcaatcgctttcactgtcatcttct
ccaggatcttatgacggagatcagttttctccactcatgaaacagcacaaatcacgaaaa
tacgactcatgcacaatttctgacgatctccacgacgaaatgaaaagactgaaaaagaag
gaagaagcattcaagacagctctgtgtggttttcaaagaagaggtcagaaatgtatttat
ggagagcaatgtaagtttgctcacagtgtgcatgagctcaggttcacacaggcaaagaaa
actcatcgtaactataaaacagttctttgcgataaattctcgacaaccgggtattgcaag
tacggagccaggtgtcagttcatccacagagctcttggctcaacttctacaaccgaatca
gcggaaatggcggatttcaagcttaatgttgaatcagacctgtctcgtgcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCCGGAATCTAGCAACCAAA 123 47 13 Antisense
GTGCTTTCCCAGACGGAACTGTTCC 430 467 68 Antisense
TAATATTGCTCCTCAATCGCTTTCA 524 635 96 Antisense
ACTGTCATCTTCTCCAGGATCTTAT 622 97 120 Antisense
GAGATCAGTTTTCTCCACTCATGAA 321 397 149 Antisense
AAGACAGCTCTGTGTGGTTTTCAAA 202 153 265 Antisense
TGCATGAGCTCAGGTTCACACAGGC 311 577 341 Antisense
GATAAATTCTCGACAACCGGGTATT 120 421 403 Antisense
CAGTTCATCCACAGAGCTCTTGGCT 512 205 448 Antisense
TCTTGGCTCAACTTCTACAACCGAA 631 617 465 Antisense
GAATCAGACCTGTCTCGTGCATTTG 22 329 523 Antisense
Sequence Source Affymetrix Proprietary Database