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[186912_at]

Description Y45F10D.10 /REP_DB=WormBase Gene ID /WP=CE16648 /TR=O62480 /GB=CAA16385.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 43      4grp_high_8_8 > 06      6grp_highest_nonorm > 80      6grp_total > 10      4grp_total > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 173
(-3)
P 		198.1
(-2.5)
P 		244.4
(-1.5)
A 		454.9
(3)
P 		282
B 143.6
(-2.7)
P 		183.5
(-2.1)
M 		122.8
(-3)
A 		525.6
(3)
P 		403
C 238.6
(-2.4)
P 		226
(-2.6)
A 		204.3
(-3)
P 		571.5
(3)
P 		367
avr 185.1
(-3) 		202.5
(-2.7) 		190.5
(-2.9) 		517.3
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 137.6
(-3)
P 		212.7
(1.1)
P 		230.9
(2.1)
P 		246.5
(3)
P 		164.5
(-1.5)
P 		201.6
(0.5)
P 		109
B 160.7
(-2.4)
P 		300.6
(3)
P 		240.2
(0.7)
P 		145.6
(-3)
P 		171.4
(-2)
P 		189.1
(-1.3)
P 		155
C 164.1
(-3)
P 		281.8
(3)
P 		253.6
(1.6)
P 		249
(1.3)
P 		226.2
(0.2)
P 		236.1
(0.7)
P 		118
avr 154.1
(-3) 		265
(3) 		241.6
(1.7) 		213.7
(0.2) 		187.4
(-1.2) 		208.9
(-0) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 63
(2.1)
P 		43
(-3)
P 		63.9
(2.3)
A 		66.6
(3)
P 		24
B 45.8
(-1.8)
P 		45.3
(-1.8)
M 		28.5
(-3)
A 		112
(3)
P 		84
C 79
(-0.3)
P 		65
(-3)
A 		71.2
(-1.8)
P 		96.4
(3)
P 		31
avr 62.6
(-1.3) 		51.1
(-3) 		54.5
(-2.5) 		91.7
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 25.4
(-3)
P 		75.7
(3)
P 		50.3
(-0)
P 		62.5
(1.4)
P 		49.7
(-0.1)
P 		49.1
(-0.2)
P 		50
B 55.9
(-1.3)
P 		100
(3)
P 		58.3
(-1.1)
P 		38.6
(-3)
P 		69.7
(0)
P 		70.5
(0.1)
P 		61
C 60.8
(-1.2)
P 		86
(3)
P 		64.5
(-0.6)
P 		50.1
(-3)
P 		73.2
(0.9)
P 		79
(1.8)
P 		36
avr 47.4
(-3) 		87.2
(3) 		57.7
(-1.4) 		50.4
(-2.5) 		64.2
(-0.5) 		66.2
(-0.2) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8772
Sequence Type Exemplar sequence
Representative Public ID Y45F10D.10 NCBI
Target Description Y45F10D.10 /REP_DB=WormBase Gene ID /WP=CE16648 /TR=O62480 /GB=CAA16385.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070258 NCBI Caenorhabditis elegans Y45F10D.10 (Y45F10D.10) mRNA, complete cds. 11/11 None
GENEFINDER00000025722 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13785759:13786796:-1 10/11 None
Y45F10D.10 ENSEMBL cdna:known chromosome:CEL140:IV:13785759:13786796:-1 gene:Y45F10D.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025708 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13785764-13786802(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10D.10
Entrez Gene 189926 Entrez gene
SwissProt O62480 EMBL-EBI
WormBase CE16648 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16385 Hypothetical protein Y45F10D.10 [Caenorhabditis elegans] ref|NP_502659.1| Y45F10D.10 [Caenorhabditis elegans] 3.0E-81
blast CAA16385 Hypothetical protein Y45F10D.10 [Caenorhabditis elegans] ref|NP_502659.1| Y45F10D.10 [Caenorhabditis elegans] 2.0E-79
blast CAE74595 Hypothetical protein CBG22376 [Caenorhabditis briggsae] 4.0E-41
blast CAE74595 Hypothetical protein CBG22376 [Caenorhabditis briggsae] 9.0E-39
Sequence
Target Sequence 
>C. ELEGANS:186912_AT
atttcagcattatacgtggcagttcaagagataaattctctaattcaaaatggaacgtct
tgcagtcgatctctcgaggaaaaaattgttgagcacttggaaaatagccaacttttaggg
aaattaccgaaaaacaacggggattctcatgaggaggtttacatggaggtcaccaagcac
ggacttcggatttcttcgagaagaacacgattagtgaaactgaggattccactgatcgag
ctgatacttttgacgacgtatgccgatggatttggaagaaccaacatagtcttcgtcgaa
aaaagcacaactacacgataccaactccatcttcttcaggccactgacgacgcttcttct
aatattttgtgtaatttaaacgctttcatcgaagccgaggaagccagtgctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAGCATTATACGTGGCAGTTC 593 15 28 Antisense
ATGGAACGTCTTGCAGTCGATCTCT 314 53 77 Antisense
AACAACGGGGATTCTCATGAGGAGG 145 133 160 Antisense
CATGGAGGTCACCAAGCACGGACTT 163 209 189 Antisense
GCACGGACTTCGGATTTCTTCGAGA 226 315 204 Antisense
GGATTCCACTGATCGAGCTGATACT 101 509 251 Antisense
GATACTTTTGACGACGTATGCCGAT 465 423 270 Antisense
GAACCAACATAGTCTTCGTCGAAAA 124 345 305 Antisense
AAGCACAACTACACGATACCAACTC 519 151 330 Antisense
TTAAACGCTTTCATCGAAGCCGAGG 2 681 403 Antisense
CGAAGCCGAGGAAGCCAGTGCTCTC 657 251 417 Antisense
Sequence Source Affymetrix Proprietary Database