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[186910_at]

Description Y51H7BR.2 /REP_DB=WormBase Gene ID /WP=CE22356 /TR=Q9N3J7 /GB=AAF60744.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 17.3
(-1.8)
A 		57.5
(3)
A 		7.2
(-3)
A 		56.3
(2.9)
A 		50
B 34.7
(3)
A 		2.9
(-3)
A 		11.7
(-1.3)
A 		28.8
(1.9)
A 		32
C 28.4
(0.3)
A 		38.8
(1.8)
A 		6.4
(-3)
A 		46.7
(3)
A 		40
avr 26.8
(0.1) 		33.1
(1.2) 		8.4
(-3) 		43.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 5.6
(-2.9)
A 		4.5
(-3)
A 		32.9
(-0)
A 		48.3
(1.6)
A 		36.6
(0.4)
A 		61.5
(3)
P 		57
B 19
(-3)
A 		34.9
(-0.6)
A 		24.5
(-2.2)
A 		19.9
(-2.9)
A 		24.7
(-2.1)
A 		58.4
(3)
P 		39
C 73.3
(2.9)
P 		19.7
(-1.7)
A 		50.6
(0.9)
A 		5.2
(-3)
A 		26.1
(-1.2)
M 		74.7
(3)
P 		70
avr 32.6
(-1.3) 		19.7
(-3) 		36
(-0.8) 		24.5
(-2.4) 		29.1
(-1.8) 		64.9
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.3
(-0.5)
A 		12.5
(3)
A 		1.9
(-3)
A 		8.2
(0.6)
A 		11
B 11.1
(3)
A 		0.7
(-3)
A 		2.7
(-1.8)
A 		6.1
(0.1)
A 		10
C 9.4
(1.8)
A 		11.2
(3)
A 		2.2
(-3)
A 		7.9
(0.8)
A 		9
avr 8.9
(3) 		8.1
(2.3) 		2.3
(-3) 		7.4
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1
(-3)
A 		1.6
(-2.7)
A 		7.2
(-0.3)
A 		12.3
(1.8)
A 		11
(1.3)
A 		15
(3)
P 		14
B 6.6
(-2.5)
A 		11.6
(-0.7)
A 		6
(-2.7)
A 		5.3
(-3)
A 		10
(-1.3)
A 		21.8
(3)
P 		17
C 27.2
(3)
P 		6
(-1.9)
A 		12.9
(-0.3)
A 		1
(-3)
A 		8.5
(-1.3)
M 		25
(2.5)
P 		26
avr 11.6
(-0.8) 		6.4
(-2.9) 		8.7
(-2) 		6.2
(-3) 		9.8
(-1.5) 		20.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5634
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.2 NCBI
Target Description Y51H7BR.2 /REP_DB=WormBase Gene ID /WP=CE22356 /TR=Q9N3J7 /GB=AAF60744.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061588 NCBI Caenorhabditis elegans Y51H7BR.2 (Y51H7BR.2) mRNA, complete cds. 11/11 A 
SNAP00000028991 ENSEMBL cdna:SNAP chromosome:CEL140:II:1536544:1537281:1 11/11 None
GENEFINDER00000028996 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1536265:1537281:1 10/11 None
Y51H7BR.2 ENSEMBL cdna:known chromosome:CEL140:II:1536265:1537281:1 gene:Y51H7BR.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1536263-1537280(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7BR.2
Entrez Gene 173528 Entrez gene
SwissProt Q9N3J7 EMBL-EBI
WormBase CE22356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60744 Hypothetical protein Y51H7BR.2 [Caenorhabditis elegans] ref|NP_493989.1| Y51H7BR.2 [Caenorhabditis elegans] 0.0
blast AAF60744 Hypothetical protein Y51H7BR.2 [Caenorhabditis elegans] ref|NP_493989.1| Y51H7BR.2 [Caenorhabditis elegans] 1.0E-138
blast AAB95025 Hypothetical protein K05F6.5 [Caenorhabditis elegans] ref|NP_493991.1| K05F6.5 [Caenorhabditis elegans] 1.0E-116
blast AAF60745 Hypothetical protein Y51H7BR.1 [Caenorhabditis elegans] ref|NP_493990.1| Y51H7BR.1 [Caenorhabditis elegans] 5.0E-95
blast AAB95025 Hypothetical protein K05F6.5 [Caenorhabditis elegans] ref|NP_493991.1| K05F6.5 [Caenorhabditis elegans] 3.0E-90
blast AAF60744 Hypothetical protein Y51H7BR.2 [Caenorhabditis elegans] ref|NP_493989.1| Y51H7BR.2 [Caenorhabditis elegans] 2.0E-68
blast AAF60745 Hypothetical protein Y51H7BR.1 [Caenorhabditis elegans] ref|NP_493990.1| Y51H7BR.1 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-7
Sequence
Target Sequence 
>C. ELEGANS:186910_AT
tcattttgaaatcaccgccactaccgcaacaaatcccaaactcttctccgcatttctacc
aataaaaaccttcggttttaatcacactgtccaatataactcctctcaactctctgcact
acggccagctttgccaaaaaaattagaatctatctatgcagatatcagcattccattaaa
cgagctactgctcacatgctccagaacccttcaaattgtcgaatcactattaacggataa
ggatattaatttgtttctgaaacattggatggccggattgaaaccagaacttgaatattt
gtatattcgaaagaatggagctgcttacaatccaaacattgttttggaaggaattcatca
cgagtttgcaccaattgacaggaaattcagaattaatcaaggaccacctcaattcggagg
aattgatattcaccaaactcgaggaggaacagcaactatgactttcaactggagctttgg
ccgtgcagagattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTTGAAATCACCGCCACTACC 478 615 441 Antisense
AATTGTCGAATCACTATTAACGGAT 50 177 654 Antisense
GGAATTCATCACGAGTTTGCACCAA 485 533 790 Antisense
GTTTGCACCAATTGACAGGAAATTC 475 451 804 Antisense
TCAGAATTAATCAAGGACCACCTCA 695 611 827 Antisense
AGGACCACCTCAATTCGGAGGAATT 159 41 840 Antisense
GGAATTGATATTCACCAAACTCGAG 141 533 859 Antisense
AAACTCGAGGAGGAACAGCAACTAT 526 125 875 Antisense
GGAACAGCAACTATGACTTTCAACT 363 529 886 Antisense
GACTTTCAACTGGAGCTTTGGCCGT 56 371 900 Antisense
GGAGCTTTGGCCGTGCAGAGATTAT 535 519 911 Antisense
Sequence Source Affymetrix Proprietary Database