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[186909_at]

Description Y45F10B.11 /REP_DB=WormBase Gene ID /WP=CE20260 /TR=Q9XXR7 /GB=CAA16361.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 11      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 16.6
(-2.7)
A 		12.6
(-3)
A 		36.2
(-1.5)
A 		104.6
(3)
P 		92
B 44.6
(1.1)
A 		37.2
(0.1)
A 		13.9
(-3)
A 		58.5
(3)
A 		45
C 49
(-1)
A 		50.7
(-1)
A 		4.2
(-3)
A 		140.6
(3)
P 		136
avr 36.7
(-1.7) 		33.5
(-1.9) 		18.1
(-3) 		101.2
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 49.7
(0.8)
A 		27.4
(-1.2)
A 		73.7
(3)
P 		28.1
(-1.1)
A 		36.4
(-0.4)
A 		7.6
(-3)
A 		66
B 26.9
(-1.4)
A 		51
(3)
A 		47.3
(2.3)
A 		18.1
(-3)
A 		51
(3)
A 		18.1
(-3)
A 		33
C 19.9
(-3)
A 		83.1
(3)
A 		28.1
(-2.2)
A 		30.9
(-2)
A 		33.4
(-1.7)
A 		26
(-2.4)
A 		63
avr 32.2
(-0.5) 		53.8
(3) 		49.7
(2.3) 		25.7
(-1.6) 		40.3
(0.8) 		17.2
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 6
(-1.4)
A 		2.7
(-3)
A 		9.5
(0.2)
A 		15.3
(3)
P 		13
B 14.2
(3)
A 		9.2
(0.3)
A 		3.2
(-3)
A 		12.5
(2.1)
A 		11
C 16.2
(1)
A 		14.6
(0.6)
A 		1.4
(-3)
A 		23.7
(3)
P 		22
avr 12.1
(0.6) 		8.8
(-1) 		4.7
(-3) 		17.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 9.2
(0.1)
A 		9.8
(0.4)
A 		16.1
(3)
P 		7.1
(-0.8)
A 		11
(0.9)
A 		1.8
(-3)
A 		14
B 9.4
(-1.3)
A 		17
(1.6)
A 		11.5
(-0.5)
A 		4.8
(-3)
A 		20.7
(3)
A 		6.8
(-2.2)
A 		16
C 7.4
(-2.6)
A 		25.3
(3)
A 		7.1
(-2.7)
A 		6.2
(-3)
A 		10.8
(-1.6)
A 		8.7
(-2.2)
A 		19
avr 8.7
(-1.5) 		17.4
(3) 		11.6
(0) 		6
(-2.9) 		14.2
(1.3) 		5.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9692
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.11 NCBI
Target Description Y45F10B.11 /REP_DB=WormBase Gene ID /WP=CE20260 /TR=Q9XXR7 /GB=CAA16361.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070219 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-9) (sru-9) mRNA, complete cds. 11/11 None
GENEFINDER00000007865 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13587444:13590306:1 11/11 None
Y45F10B.11 ENSEMBL cdna:known chromosome:CEL140:IV:13588962:13590306:1 gene:Y45F10B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007858 3/11 Cross Hyb Matching Probes None
F53B2.9 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13588967-13590312(+) 100.0 100.0
chrIV:12518190-12518911(+) 59.73 59.73
Public Domain and Genome References
Gene Title
Gene Symbol sru-9
Ensembl Y45F10B.11
Entrez Gene 189920 Entrez gene
SwissProt Q9XXR7 EMBL-EBI
WormBase CE38239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16361 Hypothetical protein Y45F10B.11 [Caenorhabditis elegans] ref|NP_502620.2| Serpentine Receptor, class U family member (sru-9) [Caenorhabditis elegans] 1.0E-167
blast CAA16361 Hypothetical protein Y45F10B.11 [Caenorhabditis elegans] ref|NP_502620.2| Serpentine Receptor, class U family member (sru-9) [Caenorhabditis elegans] 1.0E-161
blast CAA16361 Hypothetical protein Y45F10B.11 [Caenorhabditis elegans] ref|NP_502620.2| Serpentine Receptor, class U family member (sru-9) [Caenorhabditis elegans] 1.0E-120
blast CAA16359 Hypothetical protein Y45F10B.12 [Caenorhabditis elegans] ref|NP_502619.1| Y45F10B.12 [Caenorhabditis elegans] 1.0E-117
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-105
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 1.0E-101
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-100
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 4.0E-95
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 2.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-62
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502620.2 7 22-44,65-84,112-134,155-177,182-199,206-227,260-282
Y45F10B.11 7 22-44,65-84,112-134,155-177,203-225,246-265,275-297
GENEFINDER00000007865 5 235-257,278-300,305-322,329-350,383-405
Sequence
Target Sequence 
>C. ELEGANS:186909_AT
gcggctagtctcattatactacccatttaatcaggacgagctttgtgctcggataacaca
attatcaattccattcatctacatctggccactgttcttcacatttaccctatttccagc
tcttggattctgtcgacagattctaggcccttatcagtttggtgccatttatttttggtt
tagtggaaatttgtttgatataaaattaataaaaggtcttattggaaatttattattttg
gttcatcctttgcactacttcaactttgatgctctttataaaactggaaaaaatgaaaaa
ccaacgaaatagtgctctcgttcaaaaagctgagctatcgctttctctaacgactttatc
aatgctgttttcattcatttttcattttgtcggaggggtaagtatttcctttagaaattg
ctttcaatattatatttttcagctaatatttataatcaatccttattatacagcatattt
tattgctcttcggccatatggaaatgatattgaatttgtagtcgtcccttggattttcta
ctcaactcatccaattttcaaaaagcaatctgttgtcgcggatggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCTAGTCTCATTATACTACCCA 222 293 414 Antisense
ACTACCCATTTAATCAGGACGAGCT 512 101 431 Antisense
TTTACCCTATTTCCAGCTCTTGGAT 362 673 517 Antisense
TGTCGACAGATTCTAGGCCCTTATC 283 557 544 Antisense
GCCCTTATCAGTTTGGTGCCATTTA 701 285 560 Antisense
TATTTTGGTTCATCCTTTGCACTAC 465 661 647 Antisense
GCACTACTTCAACTTTGATGCTCTT 153 317 665 Antisense
TGAGCTATCGCTTTCTCTAACGACT 522 567 744 Antisense
GATATTGAATTTGTAGTCGTCCCTT 177 425 919 Antisense
TAGTCGTCCCTTGGATTTTCTACTC 484 653 932 Antisense
AGCAATCTGTTGTCGCGGATGGAGC 667 75 977 Antisense
Sequence Source Affymetrix Proprietary Database