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[186908_at]

Description C50H11.13 /REP_DB=WormBase Gene ID /WP=CE08929 /TR=O16474 /GB=AAG24000.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 67.7
(-0.4)
A 		6.3
(-3)
A 		6.2
(-3)
A 		146
(3)
A 		140
B 65.1
(0.5)
P 		4.3
(-3)
A 		35.6
(-1.2)
A 		109.9
(3)
M 		106
C 85.6
(-0.4)
A 		33.6
(-3)
A 		34.5
(-3)
A 		153.1
(3)
P 		120
avr 72.8
(-0.1) 		14.7
(-3) 		25.4
(-2.5) 		136.3
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 22.5
(-1.6)
A 		41.2
(0.1)
A 		74.9
(3)
A 		57.7
(1.5)
A 		33.3
(-0.6)
A 		6.2
(-3)
A 		69
B 23.7
(-0.4)
A 		37.5
(3)
A 		28.5
(0.8)
A 		28.3
(0.7)
A 		13.2
(-3)
A 		34.3
(2.2)
A 		24
C 26
(-0.9)
A 		27.5
(-0.7)
A 		7.1
(-3)
A 		61
(3)
A 		24.7
(-1)
A 		27.3
(-0.8)
A 		54
avr 24.1
(-2.7) 		35.4
(-0.1) 		36.8
(0.2) 		49
(3) 		23.7
(-2.8) 		22.6
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 24.7
(3)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		21.4
(2.2)
A 		23
B 20.8
(2.3)
P 		1.1
(-3)
A 		8.2
(-1.1)
A 		23.4
(3)
M 		22
C 28.3
(3)
A 		9.7
(-3)
A 		12
(-2.3)
A 		25.8
(2.2)
P 		19
avr 24.6
(3) 		4.1
(-3) 		7.3
(-2.1) 		23.5
(2.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.1
(-1.9)
A 		14.7
(2.4)
A 		16.3
(3)
A 		14.6
(2.3)
A 		10.1
(0.5)
A 		1.5
(-3)
A 		15
B 8.2
(-0.7)
A 		12.5
(2.8)
A 		6.9
(-1.8)
A 		7.5
(-1.3)
A 		5.4
(-3)
A 		12.8
(3)
A 		7
C 9.6
(1.5)
A 		8.4
(0.8)
A 		1.8
(-3)
A 		12.3
(3)
A 		8
(0.5)
A 		9.1
(1.2)
A 		11
avr 7.3
(-3) 		11.9
(3) 		8.3
(-1.7) 		11.5
(2.5) 		7.8
(-2.3) 		7.8
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15297
Sequence Type Exemplar sequence
Representative Public ID C50H11.13 NCBI
Target Description C50H11.13 /REP_DB=WormBase Gene ID /WP=CE08929 /TR=O16474 /GB=AAG24000.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071437(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071437 NCBI Caenorhabditis elegans C50H11.13 (C50H11.13) mRNA, complete cds. 10/11 None
GENEFINDER00000043578 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3069723:3071475:-1 10/11 None
C50H11.13 ENSEMBL cdna:known chromosome:CEL140:V:3069725:3071475:-1 gene:C50H11.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3069722-3071475(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50H11.13
Entrez Gene 183700 Entrez gene
SwissProt O16474 EMBL-EBI
WormBase CE35257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503838 C50H11.13 [Caenorhabditis elegans] gb|AAG24000.2| Hypothetical protein C50H11.13 [Caenorhabditis elegans] 0.0
blast NP_503838 C50H11.13 [Caenorhabditis elegans] gb|AAG24000.2| Hypothetical protein C50H11.13 [Caenorhabditis elegans] 1.0E-157
blast CAE70425 Hypothetical protein CBG16999 [Caenorhabditis briggsae] 1.0E-113
blast CAE70425 Hypothetical protein CBG16999 [Caenorhabditis briggsae] 4.0E-98
blast CAB04000 Hypothetical protein C54E10.3 [Caenorhabditis elegans] ref|NP_507676.1| C54E10.3 [Caenorhabditis elegans] 2.0E-88
blast CAB04000 Hypothetical protein C54E10.3 [Caenorhabditis elegans] ref|NP_507676.1| C54E10.3 [Caenorhabditis elegans] 3.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503838.2 6 32-54,67-89,99-121,149-171,194-216,306-325
C50H11.13 6 32-54,67-89,99-121,149-171,194-216,306-325
GENEFINDER00000043578 5 32-54,67-89,99-121,149-171,194-216
Sequence
Target Sequence 
>C. ELEGANS:186908_AT
tgtgctggaatgcctaactaccttcttcctacctctaatccttacgattttcgccgatat
ttcggttttaacatggaaaagttcgtttggaattgacattgatttggtgtcccgtgaaaa
gattagcggaaaaaatagtgagacaatgaaaattgtgtcaactaatagtttgaagaattc
aaaaaagcgccggtcaaatgcaatccgtcagtgcttgatttcatcgacaatcacgctttt
tctaaatcttccgaattatagcttacagctcctcgacgagtttttaaactttcgcgacag
caattccattcaagcgcgaagaatatttttaaggatagacgcatttgtttacgtgctgta
tttgatgcaatttcccataactccacttcgaatgttcactttgtcgaaatctcataccag
acggggatccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCTGGAATGCCTAACTACCTTC 461 557 606 Antisense
TTCCTACCTCTAATCCTTACGATTT 380 699 631 Antisense
ATCCGTCAGTGCTTGATTTCATCGA 19 39 808 Antisense
ATCACGCTTTTTCTAAATCTTCCGA 214 29 835 Antisense
TTATAGCTTACAGCTCCTCGACGAG 137 679 861 Antisense
AACTTTCGCGACAGCAATTCCATTC 389 139 892 Antisense
GACGCATTTGTTTACGTGCTGTATT 549 379 943 Antisense
TGATGCAATTTCCCATAACTCCACT 496 565 968 Antisense
AACTCCACTTCGAATGTTCACTTTG 4 143 984 Antisense
GTTCACTTTGTCGAAATCTCATACC 224 445 999 Antisense
ATCTCATACCAGACGGGGATCCATA 417 31 1014 Antisense
Sequence Source Affymetrix Proprietary Database