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[186907_at]

Description ZK970.3 /REP_DB=WormBase Gene ID /WP=CE02403 /TR=SW:Q23679 /GB=CAA88887.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 97      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1096
1 2 3 4 range
A 511.8
(-3)
P 		606.8
(-2.3)
P 		727.4
(-1.4)
P 		1343.2
(3)
P 		831
B 517.9
(-3)
P 		578.4
(-2.6)
P 		669.4
(-2)
P 		1434.2
(3)
P 		916
C 566.6
(-3)
P 		628.9
(-2.6)
P 		632.5
(-2.6)
P 		1608.2
(3)
P 		1042
avr 532.1
(-3) 		604.7
(-2.5) 		676.4
(-2.1) 		1461.9
(3) 		930

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 757
1 2 3 4 5 6 range
A 879.3
(-1.1)
P 		636.4
(-3)
P 		1047.2
(0.3)
P 		1105.1
(0.7)
P 		945.7
(-0.5)
P 		1393.5
(3)
P 		757
B 732.9
(-3)
P 		799.7
(-2.3)
P 		824.1
(-2.1)
P 		852.8
(-1.8)
P 		937
(-0.9)
P 		1326.1
(3)
P 		593
C 663.7
(-3)
P 		672.6
(-2.9)
P 		781.1
(-2)
P 		933.9
(-0.8)
P 		975.1
(-0.4)
P 		1389.5
(3)
P 		726
avr 758.6
(-2.5) 		702.9
(-3) 		884.1
(-1.4) 		963.9
(-0.7) 		952.6
(-0.8) 		1369.7
(3) 		667
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 186.4
(2.1)
P 		131.7
(-3)
P 		190.2
(2.4)
P 		196.6
(3)
P 		65
B 165.2
(-2.2)
P 		142.9
(-3)
P 		155.1
(-2.6)
P 		305.6
(3)
P 		163
C 187.6
(-2.5)
P 		180.8
(-3)
P 		220.4
(-0.4)
P 		271.2
(3)
P 		90
avr 179.7
(-1.4) 		151.8
(-3) 		188.6
(-0.9) 		257.8
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 162.1
(-3)
P 		226.3
(-0.8)
P 		228
(-0.8)
P 		280.3
(1)
P 		285.4
(1.2)
P 		339.3
(3)
P 		177
B 255
(-1.9)
P 		266.2
(-1.7)
P 		200.1
(-3)
P 		225.9
(-2.5)
P 		380.7
(0.7)
P 		494.5
(3)
P 		294
C 246
(-1.7)
P 		205.2
(-2.6)
P 		198.8
(-2.8)
P 		187.8
(-3)
P 		315.5
(-0.2)
P 		465.1
(3)
P 		277
avr 221
(-2.7) 		232.6
(-2.4) 		209
(-3) 		231.3
(-2.4) 		327.2
(0.2) 		433
(3) 		224
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2744
Sequence Type Exemplar sequence
Representative Public ID ZK970.3 NCBI
Target Description ZK970.3 /REP_DB=WormBase Gene ID /WP=CE02403 /TR=SW:Q23679 /GB=CAA88887.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063815 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-22) (mdt-22) mRNA, complete cds. 11/11 None
SNAP00000004310 ENSEMBL cdna:SNAP chromosome:CEL140:II:10301157:10301777:1 11/11 None
GENEFINDER00000004321 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10301157:10301777:1 11/11 None
ZK970.3 ENSEMBL cdna:known chromosome:CEL140:II:10301151:10301798:1 gene:ZK970.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10301153-10301774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mdt-22
Ensembl ZK970.3
Entrez Gene 174595 Entrez gene
SwissProt Q23679 EMBL-EBI
WormBase CE02403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88887 Hypothetical protein ZK970.3 [Caenorhabditis elegans] ref|NP_496216.1| MeDiaTor family member (mdt-22) [Caenorhabditis elegans] sp|Q23679|YWM3_CAEEL Hypothetical protein ZK970.3 in chromosome II 3.0E-77
blast CAE57829 Hypothetical protein CBG00854 [Caenorhabditis briggsae] 2.0E-66
blast XP_415442 PREDICTED: similar to Surf5b [Gallus gallus] dbj|BAC65167.1| Surf5b [Gallus gallus] 9.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR009332 EMBL-EBI Surfeit locus 5 1.1E-93
Sequence
Target Sequence 
>C. ELEGANS:186907_AT
gtctggagtagctggtggtgcatctaaaaagagtagtagccgtactatggctacaaagaa
gctaattattgacgaattcaaaagaaggcttcgagataatatcaaatcattaaacgacaa
cttttttcacattattcaagctgccaaggtcaacccagatgacaacgcctacaaaaatca
aacgggaaaaatgaccgaattctatacaacaaaaaatgagatggcagttcgtgcgcaact
catggttcgtgcttcagatgagctattaaaactgacggctgatctcaaagaatttctgat
tctccacgattttcactttttgacgcataacatcaagcaagctgaagcacaatgcgaaga
aacattgcgtcaacaatctcatcagcacaactgtctcgattcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGGAGTAGCTGGTGGTGCATCT 479 471 15 Antisense
ACGACAACTTTTTTCACATTATTCA 528 91 128 Antisense
TATTCAAGCTGCCAAGGTCAACCCA 678 657 147 Antisense
TCAACCCAGATGACAACGCCTACAA 389 631 164 Antisense
TGAGATGGCAGTTCGTGCGCAACTC 176 569 231 Antisense
TGCGCAACTCATGGTTCGTGCTTCA 234 585 246 Antisense
GGTTCGTGCTTCAGATGAGCTATTA 476 507 258 Antisense
AAAACTGACGGCTGATCTCAAAGAA 443 129 282 Antisense
TTCTGATTCTCCACGATTTTCACTT 574 693 308 Antisense
GAAACATTGCGTCAACAATCTCATC 409 355 373 Antisense
ATCAGCACAACTGTCTCGATTCGGA 423 27 395 Antisense
Sequence Source Affymetrix Proprietary Database