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[186906_at] 7TM chemoreceptor, srt family

Description C50H11.14 /REP_DB=WormBase Gene ID /WP=CE08930 /TR=O16477 /GB=AAG24001.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 03      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 8.5
(-3)
A 		17.9
(-2.5)
A 		9.9
(-2.9)
A 		132.2
(3)
P 		124
B 36.4
(-0)
A 		11.4
(-2.5)
A 		6.9
(-3)
A 		66.1
(3)
P 		59
C 10.2
(-3)
A 		15.4
(-2.3)
A 		12.3
(-2.7)
A 		56.4
(3)
P 		46
avr 18.4
(-2.3) 		14.9
(-2.6) 		9.7
(-3) 		84.9
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 41.8
(2.8)
A 		2.9
(-3)
A 		42.8
(3)
A 		4.3
(-2.8)
A 		3
(-3)
A 		36.2
(2)
A 		40
B 26.3
(3)
A 		10.2
(-1.8)
A 		6.4
(-2.9)
A 		11.2
(-1.5)
A 		6.2
(-3)
A 		7.1
(-2.7)
A 		20
C 5.6
(-2.6)
A 		33
(3)
A 		10.9
(-1.6)
A 		10.6
(-1.6)
A 		3.9
(-3)
A 		12.9
(-1.1)
A 		29
avr 24.6
(3) 		15.4
(0.3) 		20
(1.6) 		8.7
(-1.7) 		4.4
(-3) 		18.7
(1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.1
(-2.8)
A 		3.9
(-2.5)
A 		2.6
(-3)
A 		19.3
(3)
P 		17
B 11.6
(1.8)
A 		2.8
(-2.4)
A 		1.6
(-3)
A 		14.1
(3)
P 		13
C 3.4
(-3)
A 		4.4
(-2)
A 		4.3
(-2.1)
A 		9.5
(3)
P 		6
avr 6
(-1.3) 		3.7
(-2.5) 		2.8
(-3) 		14.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.7
(1.9)
A 		1
(-2.9)
A 		9.3
(3)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		8.8
(2.6)
A 		8
B 9.1
(3)
A 		3.4
(-1.6)
A 		1.6
(-3)
A 		3
(-1.9)
A 		2.5
(-2.3)
A 		2.7
(-2.1)
A 		8
C 2.1
(-2.4)
A 		10.1
(3)
A 		2.8
(-1.9)
A 		2.1
(-2.4)
A 		1.2
(-3)
A 		4.3
(-0.9)
A 		9
avr 6.3
(3) 		4.8
(1.1) 		4.6
(0.9) 		2.1
(-2.3) 		1.5
(-3) 		5.3
(1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15637
Sequence Type Exemplar sequence
Representative Public ID C50H11.14 NCBI
Target Description C50H11.14 /REP_DB=WormBase Gene ID /WP=CE08930 /TR=O16477 /GB=AAG24001.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071440 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-5) (srt-5) mRNA, complete cds. 11/11 None
SNAP00000043565 ENSEMBL cdna:SNAP chromosome:CEL140:V:3075331:3080719:-1 11/11 None
GENEFINDER00000043579 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3079276:3080719:-1 11/11 None
C50H11.14 ENSEMBL cdna:known chromosome:CEL140:V:3079276:3080719:-1 gene:C50H11.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3079275-3080719(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-5
Ensembl C50H11.14
Entrez Gene 183701 Entrez gene
SwissProt O16477 EMBL-EBI
WormBase CE37888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503841 Serpentine Receptor, class T family member (srt-5) [Caenorhabditis elegans] gb|AAG24001.2| Serpentine receptor, class t protein 5 [Caenorhabditis elegans] 0.0
blast NP_503841 Serpentine Receptor, class T family member (srt-5) [Caenorhabditis elegans] gb|AAG24001.2| Serpentine receptor, class t protein 5 [Caenorhabditis elegans] 1.0E-161
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 1.0E-141
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.3E-110
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.1E-45
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.8E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503841.2 7 40-62,75-97,107-129,154-176,203-225,246-268,273-295
C50H11.14 7 40-62,75-97,107-129,154-176,203-225,246-268,273-295
SNAP00000043565 6 40-62,75-97,107-129,152-174,194-216,223-245
GENEFINDER00000043579 7 40-62,75-97,107-129,154-176,203-225,246-268,273-295
Sequence
Target Sequence 
>C. ELEGANS:186906_AT
ctatggagtctcgttttgtcagcaacctattttcctgtttataacgggaagtttcatcat
tggatgttgggtttcaaattgcgtcgcgagtattcttatggcgatggatcgttgcgcaga
agtggatcctcacttcccattggcttttctttttggcaaacgaatatttattattgtgat
ttttgtattgctttgttatgggatttatgtctccgtattcactcagccaatcatattttc
tcctgaatacgcaagctatctgttcgatcctttgattggcaaaaatataattgcacaggg
tgtcattttaagctttttccacgcagcaacagctatcatttacgagtacattctgtttgt
taaccctccacaatggctcatcctggccgcccatatttcttggcagtgtagcagtggatg
tcttggaattgcatatttgacattgaatcggacaatacgaaattcggtggtcaagatgct
catccctaaaaagatcagaaaacacttcggttggtatattggagccgatgagcacgttgc
gttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATGGAGTCTCGTTTTGTCAGCAA 456 225 303 Antisense
GTCAGCAACCTATTTTCCTGTTTAT 452 465 320 Antisense
GTTGGGTTTCAAATTGCGTCGCGAG 259 433 368 Antisense
AGAAGTGGATCCTCACTTCCCATTG 302 39 420 Antisense
GGGATTTATGTCTCCGTATTCACTC 563 493 502 Antisense
TTTTCTCCTGAATACGCAAGCTATC 151 677 538 Antisense
GCAAGCTATCTGTTCGATCCTTTGA 233 321 553 Antisense
TAAGCTTTTTCCACGCAGCAACAGC 164 629 611 Antisense
GAGTACATTCTGTTTGTTAACCCTC 67 399 646 Antisense
GCCGCCCATATTTCTTGGCAGTGTA 177 285 688 Antisense
TGGAGCCGATGAGCACGTTGCGTTG 484 547 822 Antisense
Sequence Source Affymetrix Proprietary Database