[Home] | [Total List]

[186905_s_at]

Description Y62E10A.10 /REP_DB=WormBase Gene ID /WP=CE22698 /TR=Q9U1X6 /GB=CAB60598.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 82      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 67      6grp_total > 70      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2406
1 2 3 4 range
A 1299.9
(-2.9)
P 		1547.1
(-2.3)
P 		1275.9
(-3)
P 		3471.2
(3)
P 		2195
B 1386.6
(-2.4)
P 		1406.2
(-2.3)
P 		1173.6
(-3)
P 		3200.6
(3)
P 		2027
C 1367.4
(-2.7)
P 		1270.5
(-3)
P 		1404.6
(-2.7)
P 		3579.7
(3)
P 		2309
avr 1351.3
(-2.8) 		1407.9
(-2.7) 		1284.7
(-3) 		3417.2
(3) 		2133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1038
1 2 3 4 5 6 range
A 1742.5
(-0.9)
P 		1381.1
(-3)
P 		1716.6
(-1.1)
P 		2419.2
(3)
P 		1585.9
(-1.8)
P 		1796.1
(-0.6)
P 		1038
B 1758.1
(1.2)
P 		1596.8
(-3)
P 		1686.8
(-0.6)
P 		1824.9
(3)
P 		1634.7
(-2)
P 		1774
(1.7)
P 		228
C 1669
(-2)
P 		1540.9
(-3)
P 		1966.5
(0.2)
P 		2336
(3)
P 		1859.8
(-0.6)
P 		1690.4
(-1.9)
P 		795
avr 1723.2
(-1.1) 		1506.3
(-3) 		1790
(-0.5) 		2193.4
(3) 		1693.5
(-1.4) 		1753.5
(-0.8) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 473.3
(1.8)
P 		335.8
(-2.9)
P 		333.5
(-3)
P 		508.1
(3)
P 		175
B 442.2
(-0.5)
P 		347.3
(-1.9)
P 		272
(-3)
P 		682
(3)
P 		410
C 452.7
(-0.8)
P 		365.3
(-3)
P 		489.5
(0.1)
P 		603.6
(3)
P 		238
avr 456.1
(-0.4) 		349.5
(-3) 		365
(-2.6) 		597.9
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 321.2
(-3)
P 		491.2
(0.5)
P 		373.8
(-1.9)
P 		613.6
(3)
P 		478.5
(0.2)
P 		437.3
(-0.6)
P 		292
B 611.7
(1.8)
P 		531.5
(-0.1)
P 		409.6
(-3)
P 		483.4
(-1.3)
P 		664.1
(3)
P 		661.5
(2.9)
P 		255
C 618.6
(3)
P 		470.2
(-3)
P 		500.5
(-1.8)
P 		469.8
(-3)
P 		601.8
(2.3)
P 		565.9
(0.9)
P 		149
avr 517.2
(0.5) 		497.6
(-0.3) 		428
(-3) 		522.3
(0.7) 		581.5
(3) 		554.9
(2) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186905_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10243
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.10 NCBI
Target Description Y62E10A.10 /REP_DB=WormBase Gene ID /WP=CE22698 /TR=Q9U1X6 /GB=CAB60598.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070174 NCBI Caenorhabditis elegans Y62E10A.10 (Y62E10A.10) mRNA, complete cds. 11/11 None
SNAP00000008077 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13380451:13381892:-1 11/11 None
GENEFINDER00000008104 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13380451:13381892:-1 11/11 None
Y62E10A.10 ENSEMBL cdna:known chromosome:CEL140:IV:13380354:13381892:-1 gene:Y62E10A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13380456-13381898(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62E10A.10
Entrez Gene 178300 Entrez gene
SwissProt Q9U1X6 EMBL-EBI
WormBase CE22698 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254830_AT expressed protein at
CANINE:1604174_AT similar to 30 kDa protein cfa
CANINE:1588391_AT similar to 30 kDa protein cfa
CANINE_2:CFA.16749.1.S1_AT similar to 30 kDa protein cfa
CANINE_2:CFAAFFX.8756.1.S1_S_AT similar to 30 kDa protein cfa
DROSOPHILA_2:1634883_AT dm
DROSGENOME1:146187_AT dm
CHICKEN:GGA.2779.1.S1_AT 30 kDa protein gga
HG-U133A:217882_AT 30 kDa protein hs
HG-U133_PLUS_2:217882_AT 30 kDa protein hs
HG-FOCUS:217882_AT 30 kDa protein hs
HG-U133A_2:217882_AT 30 kDa protein hs
HU35KSUBA:HUM_ALU_AT 30 kDa protein hs
HU35KSUBB:HUM_ALU_AT 30 kDa protein hs
HU35KSUBC:HUM_ALU_AT 30 kDa protein hs
HU35KSUBD:HUM_ALU_AT 30 kDa protein hs
HUGENEFL:HUM_ALU_AT 30 kDa protein hs
HC-G110:HUM_ALU_AT 30 kDa protein hs
HU35KSUBA:RC_AA398674_AT 30 kDa protein hs
U133_X3P:G8923856_3P_AT 30 kDa protein hs
HG-U95C:65717_AT 30 kDa protein hs
U133_X3P:HS.287491.0.S1_3P_AT 30 kDa protein hs
HG-U133A_2:215250_AT 30 kDa protein hs
HG-U133_PLUS_2:215250_AT 30 kDa protein hs
HG-U133A:215250_AT 30 kDa protein hs
HG-U133_PLUS_2:228775_AT 30 kDa protein hs
HG-U133B:228775_AT 30 kDa protein hs
HG-U95B:45604_AT 30 kDa protein hs
HG-U95E:72161_AT 30 kDa protein hs
HU35KSUBC:RC_C20651_AT 30 kDa protein hs
HU35KSUBC:RC_AA253476_AT 30 kDa protein hs
HU35KSUBD:RC_H84891_I_AT 30 kDa protein hs
U133_X3P:HS.44754.0.A1_3P_AT 30 kDa protein hs
MG-U74AV2:97861_AT RIKEN cDNA 0610039A15 gene mm
MG-U74AV2:97862_S_AT RIKEN cDNA 0610039A15 gene mm
MOE430A:1451145_S_AT RIKEN cDNA 0610039A15 gene mm
MOUSE430A_2:1451145_S_AT RIKEN cDNA 0610039A15 gene mm
MOUSE430_2:1451145_S_AT RIKEN cDNA 0610039A15 gene mm
MU19KSUBB:TC33224_AT RIKEN cDNA 0610039A15 gene, mRNA (cDNA clone MGC:7080 IMAGE:3157147) mm
MU19KSUBB:TC33224_G_AT RIKEN cDNA 0610039A15 gene, mRNA (cDNA clone MGC:7080 IMAGE:3157147) mm
MU11KSUBB:W08664_AT RIKEN cDNA 0610039A15 gene, mRNA (cDNA clone MGC:7080 IMAGE:3157147) mm
RG-U34C:RC_AI172460_AT similar to RIKEN cDNA 0610039A15 (predicted) rn
RAE230A:1371865_AT similar to RIKEN cDNA 0610039A15 (predicted) rn
RAT230_2:1371865_AT similar to RIKEN cDNA 0610039A15 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60598 Hypothetical protein Y62E10A.10 [Caenorhabditis elegans] ref|NP_502575.1| Y62E10A.10 [Caenorhabditis elegans] 1.0E-132
blast CAE58612 Hypothetical protein CBG01779 [Caenorhabditis briggsae] 1.0E-131
blast CAB60598 Hypothetical protein Y62E10A.10 [Caenorhabditis elegans] ref|NP_502575.1| Y62E10A.10 [Caenorhabditis elegans] 1.0E-129
blast CAE58612 Hypothetical protein CBG01779 [Caenorhabditis briggsae] 1.0E-129
blast XP_623902 PREDICTED: similar to ENSANGP00000009958 [Apis mellifera] 7.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR008568 EMBL-EBI Eukaryotic protein of unknown function DUF850 1.0E-126
Pfam IPR008568 EMBL-EBI Eukaryotic protein of unknown function DUF850 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502575.1 3 10-32,114-136,163-185
Y62E10A.10 3 10-32,114-136,163-185
SNAP00000008077 3 10-32,114-136,163-185
GENEFINDER00000008104 3 10-32,122-144,173-195
Sequence
Target Sequence 
>C. ELEGANS:186905_S_AT
gccgacggacaatacttgctacgagccagactactcagagaaaacgggcgattcttgccg
aagacgtcattcaatgcgagacggcaatacttgtgtgccgaggaaactggatacttgtca
aaagcacaacagaggccagctaaaggaccgaatccaatggatccaagtcaaatgactgaa
atgttgaagggaaatatgatgaatatgatcccaatgatcgtcgtcggaggatggatcaat
tggacattctccggattcgtgaccacccgagttccattcccactgactctcaaattcaaa
gcgatgcttcaaagaggagttgatctcgtttcccttgattctgcctgggtctcctcagct
tcctggtacttcctttgtatgttcggccttcgatcaatctacacacttgttctcggaagt
gaaaatgctgctgatcagagtaaagcgatggaagatcaaatggcaatgactggctctgca
gtgaatccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGACGGACAATACTTGCTACGAG 279 283 154 Antisense
CTTGCTACGAGCCAGACTACTCAGA 235 219 168 Antisense
GGCGATTCTTGCCGAAGACGTCATT 617 541 200 Antisense
GAGGCCAGCTAAAGGACCGAATCCA 366 405 285 Antisense
TGGACATTCTCCGGATTCGTGACCA 177 549 394 Antisense
ATTCCCACTGACTCTCAAATTCAAA 314 9 429 Antisense
AAGAGGAGTTGATCTCGTTTCCCTT 623 153 465 Antisense
CTTCCTGGTACTTCCTTTGTATGTT 393 219 512 Antisense
GTATGTTCGGCCTTCGATCAATCTA 706 453 530 Antisense
GATCAATCTACACACTTGTTCTCGG 315 421 545 Antisense
TGACTGGCTCTGCAGTGAATCCACA 686 569 620 Antisense
Sequence Source Affymetrix Proprietary Database