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[186904_at] 7TM chemoreceptor, srv family

Description T13A10.13 /REP_DB=WormBase Gene ID /WP=CE07494 /TR=Q22451 /GB=AAB38128.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 40      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.1
(-1.8)
A 		4.3
(-1.7)
A 		2
(-3)
A 		12.6
(3)
A 		11
B 7.1
(-1.8)
A 		3.9
(-2.7)
A 		24.7
(3)
A 		2.9
(-3)
A 		22
C 3.4
(-2.3)
A 		1.8
(-3)
A 		15.5
(3)
A 		7.4
(-0.5)
A 		14
avr 4.9
(-2.1) 		3.3
(-3) 		14.1
(3) 		7.6
(-0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.6
(-2.7)
A 		2.1
(-3)
A 		37.3
(3)
A 		3.3
(-2.8)
A 		5.5
(-2.4)
A 		4.5
(-2.6)
A 		35
B 2.5
(-1.1)
A 		5.5
(3)
A 		3.6
(0.4)
A 		2.1
(-1.6)
A 		1.1
(-3)
A 		1.4
(-2.6)
A 		4
C 2.4
(-0.8)
A 		2.8
(-0.2)
A 		4.9
(3)
A 		3.7
(1.2)
A 		3.6
(1)
A 		1
(-3)
A 		4
avr 2.8
(-2.8) 		3.5
(-2.4) 		15.3
(3) 		3
(-2.7) 		3.4
(-2.5) 		2.3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.5
(1.6)
A 		0.9
(-1.2)
A 		0.5
(-3)
A 		1.8
(3)
A 		1
B 2.2
(-1.1)
A 		1
(-2.5)
A 		5.7
(3)
A 		0.6
(-3)
A 		5
C 1.1
(-2.3)
A 		0.5
(-3)
A 		5.4
(3)
A 		1.3
(-2)
A 		5
avr 1.6
(-1.5) 		0.8
(-3) 		3.9
(3) 		1.2
(-2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.7
(-3)
A 		8.1
(3)
A 		0.8
(-2.9)
A 		1.7
(-2.2)
A 		1.1
(-2.7)
A 		7
B 0.9
(-0.9)
A 		1.8
(3)
A 		0.9
(-0.9)
A 		0.6
(-2.1)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1
C 0.9
(0.6)
A 		0.9
(0.6)
A 		1.3
(3)
A 		0.7
(-0.6)
A 		1.2
(2.4)
A 		0.3
(-3)
A 		1
avr 0.8
(-2.6) 		1.1
(-1.9) 		3.4
(3) 		0.7
(-2.8) 		1.1
(-1.9) 		0.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10769
Sequence Type Exemplar sequence
Representative Public ID T13A10.13 NCBI
Target Description T13A10.13 /REP_DB=WormBase Gene ID /WP=CE07494 /TR=Q22451 /GB=AAB38128.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068555 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-33) (srv-33) mRNA, complete cds. 11/11 None
SNAP00000039098 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6282915:6283717:-1 11/11 None
GENEFINDER00000039103 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6277465:6284351:-1 11/11 None
T13A10.13 ENSEMBL cdna:known chromosome:CEL140:IV:6282915:6284351:-1 gene:T13A10.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6282920-6284357(-) 99.51 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-33
Ensembl T13A10.13
Entrez Gene 188465 Entrez gene
SwissProt Q22451 EMBL-EBI
WormBase CE07494 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16856 hypothetical protein T13A10.11 - Caenorhabditis elegans 0.0
blast NP_741415 Temporarily Assigned Gene name family member (tag-32) [Caenorhabditis elegans] sp|Q27522|METN_CAEEL Probable S-adenosylmethionine synthetase T13A10.11 (Methionine adenosyltransferase) (AdoMet synthetase) gb|AAB38126.2| Temporarily assigned gene name protein 32, isoform a [Caenorhabditis elegans] 0.0
blast AAA82279 Hypothetical protein C06E7.3a [Caenorhabditis elegans] ref|NP_500871.1| C06E7.3a [Caenorhabditis elegans] sp|P50306|METL_CAEEL Probable S-adenosylmethionine synthetase C06E7.3 (Methionine adenosyltransferase) (AdoMet synthetase) 0.0
blast NP_500956 Serpentine Receptor, class V family member (srv-33) [Caenorhabditis elegans] gb|AAB38128.1| Serpentine receptor, class v protein 33 [Caenorhabditis elegans] 1.0E-170
blast CAE61566 Hypothetical protein CBG05476 [Caenorhabditis briggsae] 1.0E-114
blast NP_500955 Serpentine Receptor, class V family member (srv-32) [Caenorhabditis elegans] gb|AAB38127.1| Serpentine receptor, class v protein 32 [Caenorhabditis elegans] 1.0E-111
blast NP_500956 Serpentine Receptor, class V family member (srv-33) [Caenorhabditis elegans] gb|AAB38128.1| Serpentine receptor, class v protein 33 [Caenorhabditis elegans] 7.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 2.5E-94
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.3E-52
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.5E-7
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 1.1E-97
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 6.2E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500956.1 7 15-37,50-72,101-123,136-158,187-209,230-247,262-284
T13A10.13 7 15-37,50-72,101-123,136-158,187-209,230-247,262-284
SNAP00000039098 3 15-37,54-76,91-113
GENEFINDER00000039103 12 15-37,50-72,101-123,136-158,187-209,230-247,262-284,468-490,513-535,599-621,636-658,671-693
Sequence
Target Sequence 
>C. ELEGANS:186904_AT
aacactctgatggcactcgttgtagttggtctaacctgtattttgtgctcattggcatat
ggagcacttttctattatattcgaaaacatactgcaggactatcaagatctctccgacga
gagctacacttggcatttcaagtcttcgtgttacttcttgcattctttgcaattctggtc
tattatgcatttcaaaattatttttctcaaactcacaatactggaccaatattctacatg
cgtgctctgtatcctgttgcaaatgggcttctatcgtacatcaacccattttgcatacta
tttttaaaccgggatctagcacgtcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTCTGATGGCACTCGTTGTAG 541 133 559 Antisense
TGGTCTAACCTGTATTTTGTGCTCA 73 553 585 Antisense
GGACTATCAAGATCTCTCCGACGAG 420 521 655 Antisense
GACGAGAGCTACACTTGGCATTTCA 187 379 674 Antisense
TTCGTGTTACTTCTTGCATTCTTTG 497 695 703 Antisense
GCAATTCTGGTCTATTATGCATTTC 424 323 727 Antisense
TTCTCAAACTCACAATACTGGACCA 634 691 762 Antisense
CGTGCTCTGTATCCTGTTGCAAATG 411 245 799 Antisense
GTTGCAAATGGGCTTCTATCGTACA 388 439 814 Antisense
TTCTATCGTACATCAACCCATTTTG 130 683 827 Antisense
TAAACCGGGATCTAGCACGTCAAGT 224 637 863 Antisense
Sequence Source Affymetrix Proprietary Database