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[186903_at]

Description Y55B1BL.1 /REP_DB=WormBase Gene ID /WP=CE22511 /TR=Q9N381 /GB=AAF59593.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 64      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 67      6grp_total > 09      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2150
1 2 3 4 range
A 1697.6
(-0.7)
P 		1144.4
(-2.3)
P 		921.8
(-3)
P 		2973.4
(3)
P 		2052
B 1442
(-1.1)
P 		1149.1
(-2)
P 		823.7
(-3)
P 		2741
(3)
P 		1917
C 1710.6
(0.3)
P 		1258.1
(-1.8)
P 		1000.6
(-3)
P 		2293.3
(3)
P 		1293
avr 1616.7
(-0.6) 		1183.9
(-2.1) 		915.4
(-3) 		2669.2
(3) 		1754

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 1557.6
(-3)
P 		1945.5
(1.4)
P 		1730.4
(-1.1)
P 		1949.7
(1.4)
P 		1632.6
(-2.2)
P 		2091.5
(3)
P 		534
B 1612.7
(-1.7)
P 		1509.8
(-3)
P 		1968.2
(3)
P 		1736.2
(-0)
P 		1633.6
(-1.4)
P 		1716.2
(-0.3)
P 		458
C 2493.9
(3)
P 		1661.4
(-3)
P 		1880.4
(-1.4)
P 		1951.8
(-0.9)
P 		1932.7
(-1)
P 		1722.8
(-2.6)
P 		833
avr 1888.1
(3) 		1705.6
(-3) 		1859.7
(2.1) 		1879.2
(2.7) 		1733
(-2.1) 		1843.5
(1.5) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 618.1
(3)
P 		248.4
(-2.9)
P 		241
(-3)
P 		435.2
(0.1)
P 		377
B 459.8
(1.1)
P 		283.8
(-1.6)
P 		190.9
(-3)
P 		584.1
(3)
P 		393
C 566.3
(3)
P 		361.7
(-2.6)
P 		348.7
(-3)
P 		386.7
(-2)
P 		218
avr 548.1
(3) 		298
(-2.2) 		260.2
(-3) 		468.7
(1.3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 287.1
(-3)
P 		691.9
(3)
P 		376.8
(-1.7)
P 		494.5
(0.1)
P 		492.7
(0)
P 		509.2
(0.3)
P 		405
B 561.2
(-0)
P 		502.5
(-1.7)
P 		477.9
(-2.5)
P 		459.9
(-3)
P 		663.7
(3)
P 		640
(2.3)
P 		204
C 924.4
(3)
P 		506.9
(-1.7)
P 		478.6
(-2)
P 		392.5
(-3)
P 		625.4
(-0.4)
P 		576.7
(-0.9)
P 		532
avr 590.9
(2.9) 		567.1
(1.9) 		444.4
(-3) 		449
(-2.8) 		593.9
(3) 		575.3
(2.3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8287
Sequence Type Exemplar sequence
Representative Public ID Y55B1BL.1 NCBI
Target Description Y55B1BL.1 /REP_DB=WormBase Gene ID /WP=CE22511 /TR=Q9N381 /GB=AAF59593.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064795 NCBI Caenorhabditis elegans Y55B1BL.1 (Y55B1BL.1) mRNA, complete cds. 11/11 None
SNAP00000000023 ENSEMBL cdna:SNAP chromosome:CEL140:III:403574:404390:1 11/11 None
GENEFINDER00000000025 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:403574:405375:1 11/11 None
Y55B1BL.1 ENSEMBL cdna:known chromosome:CEL140:III:402449:404416:1 gene:Y55B1BL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:403573-404416(+) 94.07 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1BL.1
Entrez Gene 175199 Entrez gene
SwissProt Q9N381 EMBL-EBI
WormBase CE22511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59593 Hypothetical protein Y55B1BL.1 [Caenorhabditis elegans] ref|NP_497196.1| Y55B1BL.1 [Caenorhabditis elegans] 6.0E-52
blast AAF59593 Hypothetical protein Y55B1BL.1 [Caenorhabditis elegans] ref|NP_497196.1| Y55B1BL.1 [Caenorhabditis elegans] 5.0E-51
blast AAF59593 Hypothetical protein Y55B1BL.1 [Caenorhabditis elegans] ref|NP_497196.1| Y55B1BL.1 [Caenorhabditis elegans] 2.0E-46
blast CAE69492 Hypothetical protein CBG15698 [Caenorhabditis briggsae] 8.0E-28
blast CAE69492 Hypothetical protein CBG15698 [Caenorhabditis briggsae] 1.0E-27
blast CAE69492 Hypothetical protein CBG15698 [Caenorhabditis briggsae] 6.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497196.1 1 4-26
Y55B1BL.1 1 4-26
SNAP00000000023 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:186903_AT
gttgttgtagtcactgctggaaccgctctcgccgtcaccgtaccactcgtggcgctgaaa
gagtcattggagagccgtttcaagagtaacatgaagaagcacttgccacatagaccacgt
tgtcgcgtcaacttccctgatattgagaacgaactcgagcagcaatatcagtacgtcatg
aataataagaacagcacacgtaacatgaaggaccacttggtgccaaacaactccaaatgc
tcttctgatgatgaagacaactcatccaccatcagttctccaccgagctacaacgacatc
actcagcaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTGTAGTCACTGCTGGAACCG 565 437 22 Antisense
CCGTACCACTCGTGGCGCTGAAAGA 546 263 59 Antisense
GAGTCATTGGAGAGCCGTTTCAAGA 572 399 82 Antisense
AAGAAGCACTTGCCACATAGACCAC 217 153 115 Antisense
CATAGACCACGTTGTCGCGTCAACT 681 211 130 Antisense
TCGCGTCAACTTCCCTGATATTGAG 112 601 144 Antisense
CGAGCAGCAATATCAGTACGTCATG 165 249 177 Antisense
GCACACGTAACATGAAGGACCACTT 302 315 215 Antisense
GGACCACTTGGTGCCAAACAACTCC 351 521 231 Antisense
GATGAAGACAACTCATCCACCATCA 635 411 271 Antisense
GCTACAACGACATCACTCAGCAACC 21 303 308 Antisense
Sequence Source Affymetrix Proprietary Database