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[186901_at] 7TM chemoreceptor, srt family

Description C50H11.10 /REP_DB=WormBase Gene ID /WP=CE08926 /TR=O16470 /GB=AAG23997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 20      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 44.2
(3)
A 		5.7
(-3)
A 		12.8
(-1.9)
A 		19.1
(-0.9)
A 		39
B 43.7
(-0.3)
A 		72.2
(2.1)
A 		10
(-3)
A 		83.7
(3)
A 		74
C 58.4
(-1)
A 		62.1
(-0.8)
A 		20.1
(-3)
A 		136.6
(3)
A 		117
avr 48.8
(0.2) 		46.7
(-0) 		14.3
(-3) 		79.8
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 63.1
(3)
A 		22.7
(-1.4)
A 		58.2
(2.5)
A 		23.3
(-1.4)
A 		42.1
(0.7)
A 		8.3
(-3)
A 		55
B 6.5
(-3)
A 		59.5
(3)
A 		33.3
(0)
A 		6.9
(-3)
A 		10
(-2.6)
A 		10.4
(-2.6)
A 		53
C 10.9
(-2.3)
A 		73.5
(3)
A 		8.7
(-2.5)
A 		2.8
(-3)
A 		31.9
(-0.5)
A 		3
(-3)
A 		71
avr 26.8
(-0.4) 		51.9
(3) 		33.4
(0.5) 		11
(-2.5) 		28
(-0.2) 		7.2
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.1
(3)
A 		1.2
(-3)
A 		3.3
(-2.2)
A 		2.8
(-2.4)
A 		15
B 13.9
(1.5)
A 		17.8
(3)
A 		2.3
(-3)
A 		17.8
(3)
A 		16
C 19.3
(1.6)
A 		17.8
(1.1)
A 		7
(-3)
A 		23
(3)
A 		16
avr 16.4
(3) 		12.3
(1) 		4.2
(-3) 		14.5
(2.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.6
(2.4)
A 		8.1
(0.4)
A 		12.7
(3)
A 		5.9
(-0.8)
A 		12.7
(3)
A 		2
(-3)
A 		11
B 2.3
(-2.8)
A 		19.8
(3)
A 		8.1
(-0.9)
A 		1.8
(-3)
A 		4.1
(-2.2)
A 		3.9
(-2.3)
A 		18
C 4
(-2.1)
A 		22.4
(3)
A 		2.2
(-2.6)
A 		0.6
(-3)
A 		10.3
(-0.3)
A 		1
(-2.9)
A 		22
avr 6
(-1.5) 		16.8
(3) 		7.7
(-0.8) 		2.8
(-2.8) 		9
(-0.2) 		2.3
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15788
Sequence Type Exemplar sequence
Representative Public ID C50H11.10 NCBI
Target Description C50H11.10 /REP_DB=WormBase Gene ID /WP=CE08926 /TR=O16470 /GB=AAG23997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071433 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-15) (srt-15) mRNA, complete cds. 11/11 None
SNAP00000043559 ENSEMBL cdna:SNAP chromosome:CEL140:V:3059467:3062005:-1 11/11 None
GENEFINDER00000043573 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3057098:3062005:-1 11/11 None
C50H11.10 ENSEMBL cdna:known chromosome:CEL140:V:3059467:3062005:-1 gene:C50H11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3059466-3061340(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-15
Ensembl C50H11.10
Entrez Gene 183698 Entrez gene
SwissProt O16470 EMBL-EBI
WormBase CE37958 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503834 Serpentine Receptor, class T family member (srt-15) [Caenorhabditis elegans] gb|AAG23997.2| Serpentine receptor, class t protein 15 [Caenorhabditis elegans] 0.0
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 1.0E-140
blast H88985 protein C50H11.9 [imported] - Caenorhabditis elegans 1.0E-129
blast NP_505332 Serpentine Receptor, class T family member (srt-18) [Caenorhabditis elegans] gb|AAC48103.2| Serpentine receptor, class t protein 18 [Caenorhabditis elegans] 6.0E-97
blast NP_503835 Serpentine Receptor, class T family member (srt-16) [Caenorhabditis elegans] gb|AAG23998.3| Serpentine receptor, class t protein 16 [Caenorhabditis elegans] 4.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.7E-124
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503834.2 7 52-74,87-109,124-146,167-189,216-238,258-277,287-309
C50H11.10 7 52-74,87-109,124-146,167-189,216-238,258-277,287-309
SNAP00000043559 7 52-74,87-109,124-146,167-189,216-238,258-277,287-309
GENEFINDER00000043573 11 52-74,87-109,124-146,167-189,214-236,257-279,366-388,401-423,474-496,517-539,554-576
Sequence
Target Sequence 
>C. ELEGANS:186901_AT
tgttgcgcgtcgagtttggtgctcgccgtgattcgtgtgtcggatctgaactctacgaac
acattcaaaaaaagcttcgatggagggaaaatcaattatgtgcttttggtctgctttgcc
tatgtgttttatggaacgtttttcacaaaaccagtcatctacaacactggatacatgaca
tgggtttttgacccgaatattggaaaaagttcgtccaactacgtgaactacatccacatt
tccaataactcaatggtggcaattttaagtatttcgttctatggataccttgcctctatt
tacttgaggggaaactccactgctaatgcatcgaaaaagttgtcgaatatgcaaatcaag
attttattgcaatccttcctattctgctttttccattccgtcagtgcacttttgtatgcg
tacatgcaacttttcgtcggcacaagcacacttattctaattggacatctgacttggata
tgtgatagtggctccgtgtgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGCGCGTCGAGTTTGGTGCTCG 574 563 184 Antisense
GATTCGTGTGTCGGATCTGAACTCT 220 433 213 Antisense
TTATGTGCTTTTGGTCTGCTTTGCC 223 681 279 Antisense
CGTCCAACTACGTGAACTACATCCA 628 245 395 Antisense
ACTACATCCACATTTCCAATAACTC 563 101 410 Antisense
GATACCTTGCCTCTATTTACTTGAG 457 423 467 Antisense
GAAACTCCACTGCTAATGCATCGAA 571 357 494 Antisense
CCATTCCGTCAGTGCACTTTTGTAT 111 271 576 Antisense
TGCGTACATGCAACTTTTCGTCGGC 80 583 600 Antisense
TTTTCGTCGGCACAAGCACACTTAT 465 677 614 Antisense
TATGTGATAGTGGCTCCGTGTGCAT 437 655 662 Antisense
Sequence Source Affymetrix Proprietary Database