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[186900_at]

Description C04E12.12 /REP_DB=WormBase Gene ID /WP=CE16825 /TR=O76685 /GB=AAC27097.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 17.7
(2.3)
A 		19.1
(3)
A 		7.6
(-3)
A 		18.8
(2.8)
A 		12
B 3.8
(-3)
A 		6.5
(1.6)
A 		4.1
(-2.5)
A 		7.3
(3)
A 		4
C 6.5
(-3)
A 		16.3
(-1.5)
A 		9.4
(-2.6)
A 		45.3
(3)
A 		39
avr 9.3
(-2.2) 		14
(-0.5) 		7
(-3) 		23.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.3
(-1.9)
A 		18.8
(3)
A 		13.6
(1)
A 		3.4
(-3)
A 		4.4
(-2.6)
A 		3.5
(-3)
A 		15
B 4.3
(-2.1)
A 		4.8
(-1.6)
A 		6.9
(0.4)
A 		3.4
(-3)
A 		9.5
(3)
A 		8.6
(2.1)
A 		6
C 9.7
(-0.7)
A 		4.7
(-2.8)
A 		8.8
(-1.1)
A 		10.6
(-0.4)
A 		4.1
(-3)
A 		19
(3)
A 		15
avr 6.8
(-1.7) 		9.4
(1.7) 		9.8
(2.2) 		5.8
(-3) 		6
(-2.7) 		10.4
(3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.5
(3)
A 		4.1
(-0.2)
A 		2
(-3)
A 		2.7
(-2.1)
A 		5
B 1.2
(-0.4)
A 		1.6
(3)
A 		0.9
(-3)
A 		1.6
(3)
A 		1
C 2.2
(-3)
A 		4.7
(-0.2)
A 		3.3
(-1.8)
A 		7.6
(3)
A 		5
avr 3.3
(0.8) 		3.5
(1.4) 		2.1
(-3) 		4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		6.7
(3)
A 		3
(-0.8)
A 		0.9
(-3)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		6
B 1.5
(-1.8)
A 		1.6
(-1.6)
A 		1.7
(-1.4)
A 		0.9
(-3)
A 		3.9
(3)
A 		3.2
(1.6)
A 		3
C 3.6
(-0.2)
A 		1.4
(-2.9)
A 		2.2
(-1.9)
A 		2.1
(-2)
A 		1.3
(-3)
A 		6.3
(3)
A 		5
avr 2.1
(-0.8) 		3.2
(2.2) 		2.3
(-0.3) 		1.3
(-3) 		2.2
(-0.5) 		3.5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15078
Sequence Type Exemplar sequence
Representative Public ID C04E12.12 NCBI
Target Description C04E12.12 /REP_DB=WormBase Gene ID /WP=CE16825 /TR=O76685 /GB=AAC27097.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071543 NCBI Caenorhabditis elegans C04E12.12 (C04E12.12) mRNA, complete cds. 11/11 None
C04E12.12 ENSEMBL cdna:known chromosome:CEL140:V:3389134:3390778:-1 gene:C04E12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3389133-3390778(-) 100.0 100.0
chrV:3313318-3315060(-) 90.92 90.92
Public Domain and Genome References
Gene Title
Ensembl C04E12.12
Entrez Gene 182217 Entrez gene
SwissProt O76685 EMBL-EBI
WormBase CE16825 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
7600 sensory perception inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC27097 Hypothetical protein C04E12.12 [Caenorhabditis elegans] ref|NP_503944.1| C04E12.12 [Caenorhabditis elegans] 0.0
blast AAF99937 Hypothetical protein F35F10.12 [Caenorhabditis elegans] ref|NP_503917.1| F35F10.12 [Caenorhabditis elegans] 1.0E-134
blast CAE73271 Hypothetical protein CBG20689 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 3.5E-21
Pfam IPR000698 EMBL-EBI Arrestin 4.5E-59
Sequence
Target Sequence 
>C. ELEGANS:186900_AT
gttgatcggccctggcgtatggataaggataagaagcgatgcatcactgtttctccattg
atcgatctgaatgtcattcctcacgcactcacccagatcaatgaccaagcaagtgagaat
cttggctgctgttgcttcacaaagggatatctcgagcttcgtgtgaacatcccaaaaacc
ggtttcgttcccggtgaaactgtccccatgaatatccacatactcaatcactcctccgtg
cccgttaccaaagtcaaggcaaaaatcatccagcagtgcaagttcatcgcataccgaaac
gcgggagttgctccaggtggagtcgctccaccacccggatatggattcttaccaatgact
gatggtgcagagaatggagccggaaatgcaccatatccagttggtctgcctaatccagct
gatgtggtcgttccatatccaagcggagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATCGGCCCTGGCGTATGGATA 95 437 418 Antisense
CTGTTTCTCCATTGATCGATCTGAA 476 239 464 Antisense
CACTCACCCAGATCAATGACCAAGC 490 197 503 Antisense
GTGAGAATCTTGGCTGCTGTTGCTT 143 483 530 Antisense
AGTTCATCGCATACCGAAACGCGGG 706 61 698 Antisense
TACCGAAACGCGGGAGTTGCTCCAG 25 647 709 Antisense
AGTTGCTCCAGGTGGAGTCGCTCCA 609 63 723 Antisense
AGCCGGAAATGCACCATATCCAGTT 258 83 795 Antisense
TATCCAGTTGGTCTGCCTAATCCAG 466 657 811 Antisense
AGCTGATGTGGTCGTTCCATATCCA 501 81 834 Antisense
GGTCGTTCCATATCCAAGCGGAGAT 277 503 843 Antisense
Sequence Source Affymetrix Proprietary Database