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[186899_s_at]

Description R151.9 /REP_DB=WormBase Gene ID /WP=CE00827 /TR=SW:Q21993 /GB=AAK29855.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 36      6grp_total > 30      4grp_total > 09      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13774
1 2 3 4 range
A 3629.7
(-3)
P 		5316.5
(-2.2)
P 		5523
(-2.1)
P 		16901.7
(3)
P 		13272
B 3381.2
(-3)
P 		5092.3
(-2.1)
P 		5560.1
(-1.9)
P 		15158
(3)
P 		11777
C 3915
(-3)
P 		5051.6
(-2.5)
P 		5668.9
(-2.2)
P 		17155
(3)
P 		13240
avr 3642
(-3) 		5153.5
(-2.3) 		5584
(-2.1) 		16404.9
(3) 		12763

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2437
1 2 3 4 5 6 range
A 4306.2
(-1)
P 		4380.1
(-0.8)
P 		5829.1
(3)
P 		4715.1
(0)
P 		3884.2
(-2.2)
P 		3568.4
(-3)
P 		2261
B 4706.9
(1.3)
P 		5188.5
(3)
P 		5160.5
(2.9)
P 		4682.4
(1.2)
P 		3516.3
(-3)
P 		4771.4
(1.5)
P 		1672
C 3394.5
(-3)
P 		5228.5
(3)
P 		4165.2
(-0.5)
P 		5083.8
(2.5)
P 		3392.3
(-3)
P 		3842.4
(-1.5)
P 		1836
avr 4135.9
(-0.8) 		4932.4
(2.5) 		5051.6
(3) 		4827.1
(2.1) 		3597.6
(-3) 		4060.7
(-1.1) 		1454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2152
1 2 3 4 range
A 1321.6
(-2.2)
P 		1154.1
(-3)
P 		1443.8
(-1.7)
P 		2474.1
(3)
P 		1320
B 1078.3
(-3)
P 		1257.7
(-2.5)
P 		1288.4
(-2.4)
P 		3230.2
(3)
P 		2152
C 1296
(-3)
P 		1452.4
(-2.4)
P 		1975.8
(-0.4)
P 		2892.6
(3)
P 		1597
avr 1232
(-3) 		1288.1
(-2.8) 		1569.3
(-1.8) 		2865.6
(3) 		1634

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 985
1 2 3 4 5 6 range
A 793.8
(-3)
P 		1557.8
(3)
P 		1269.4
(0.7)
P 		1195.8
(0.2)
P 		1172.1
(-0)
P 		868.8
(-2.4)
P 		764
B 1637.8
(1.4)
P 		1727
(2.4)
P 		1253.1
(-2.9)
P 		1240.2
(-3)
P 		1428.6
(-0.9)
P 		1779.2
(3)
P 		539
C 1258.2
(-0.5)
P 		1595.4
(3)
P 		1060.1
(-2.6)
P 		1022.4
(-3)
P 		1097.7
(-2.2)
P 		1286.3
(-0.2)
P 		573
avr 1229.9
(-2) 		1626.7
(3) 		1194.2
(-2.5) 		1152.8
(-3) 		1232.8
(-2) 		1311.4
(-1) 		474
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186899_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7992
Sequence Type Exemplar sequence
Representative Public ID R151.9 NCBI
Target Description R151.9 /REP_DB=WormBase Gene ID /WP=CE00827 /TR=SW:Q21993 /GB=AAK29855.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066181(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066181 NCBI Caenorhabditis elegans R151.9 (R151.9) mRNA, complete cds. 11/11 None
SNAP00000037931 ENSEMBL cdna:SNAP chromosome:CEL140:III:7198206:7198807:-1 11/11 None
GENEFINDER00000037951 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7198206:7198807:-1 11/11 None
R151.9 ENSEMBL cdna:known chromosome:CEL140:III:7198076:7198808:-1 gene:R151.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7198203-7198805(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R151.9
Entrez Gene 176013 Entrez gene
SwissProt Q21993 EMBL-EBI
WormBase CE00827 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16272 prefoldin complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29855 Hypothetical protein R151.9 [Caenorhabditis elegans] ref|NP_498582.1| R151.9 [Caenorhabditis elegans] gb|AAG50216.1| 3H288 [Caenorhabditis elegans] sp|Q21993|PFD5_CAEEL Probable prefoldin subunit 3.0E-71
blast CAE70153 Hypothetical protein CBG16620 [Caenorhabditis briggsae] 1.0E-63
blast XP_785869 PREDICTED: similar to prefoldin 5 [Strongylocentrotus purpuratus] 4.0E-18
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.0179999992251396
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 2.8E-39
Sequence
Target Sequence 
>C. ELEGANS:186899_S_AT
gagtaccgctgtcagagctcagcttgcaacaactcggagaactccagaagaattgcgaac
aagaattaaacttcttccaggagtctttcaatgctcttaaaggtcttttaacgcggaacg
aaaaaagtatttctgctttggacgatgtgaaaattgcaactgcaggacatacagctctca
ttccactttctgaatcgctctacatccgtgctgaactatctgatccatcaaagcatttgg
tggagatcggaactggatacttcgtggagctggaccgcgagaaagccaaagcaatttttg
accgtaaaaaggaacatattacaaagcaggttgagacagttgagggaattctgaaagaga
agcgaagaactcgggcctatatttcggacgcattccagaccaaggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACCGCTGTCAGAGCTCAGCTT 444 399 32 Antisense
GAGCTCAGCTTGCAACAACTCGGAG 320 387 46 Antisense
CTTCTTCCAGGAGTCTTTCAATGCT 577 221 102 Antisense
AGTATTTCTGCTTTGGACGATGTGA 468 63 157 Antisense
TGCAGGACATACAGCTCTCATTCCA 367 579 192 Antisense
TCATTCCACTTTCTGAATCGCTCTA 106 619 209 Antisense
TCCGTGCTGAACTATCTGATCCATC 449 595 236 Antisense
TGGATACTTCGTGGAGCTGGACCGC 124 549 285 Antisense
GCTGGACCGCGAGAAAGCCAAAGCA 619 293 300 Antisense
TCGGGCCTATATTTCGGACGCATTC 10 601 402 Antisense
TCGGACGCATTCCAGACCAAGGTTC 683 603 415 Antisense
Sequence Source Affymetrix Proprietary Database