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[186898_at]

Description Y105C5B.11 /REP_DB=WormBase Gene ID /WP=CE24060 /TR=Q9U313 /GB=CAB60315.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 4.4
(-3)
A 		12.5
(3)
A 		6.7
(-1.3)
A 		11.7
(2.4)
A 		8
B 7.3
(-2.5)
A 		58.2
(3)
A 		2.6
(-3)
A 		9.8
(-2.2)
A 		56
C 3.9
(-3)
A 		6.9
(-2.4)
A 		7.1
(-2.4)
A 		34.2
(3)
A 		30
avr 5.2
(-3) 		25.9
(3) 		5.5
(-2.9) 		18.6
(0.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 6.1
(-2.6)
A 		7.4
(-2.4)
A 		3.4
(-3)
A 		34.8
(1.6)
A 		17.1
(-1)
A 		44.6
(3)
A 		41
B 3.7
(-3)
A 		4.9
(-2.9)
A 		7.7
(-2.5)
A 		8.3
(-2.5)
A 		7
(-2.6)
A 		56.8
(3)
A 		53
C 1.7
(-3)
A 		8.9
(-2.4)
A 		2.2
(-3)
A 		5.6
(-2.7)
A 		7.3
(-2.5)
A 		73.2
(3)
A 		72
avr 3.8
(-3) 		7.1
(-2.6) 		4.4
(-2.9) 		16.2
(-1.6) 		10.5
(-2.3) 		58.2
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.6
(-3)
A 		2.7
(3)
A 		1.8
(-1.9)
A 		1.7
(-2.5)
A 		1
B 2.3
(-2.3)
A 		14.4
(3)
A 		0.6
(-3)
A 		2.1
(-2.3)
A 		14
C 1.3
(-3)
A 		2
(-2.1)
A 		2.5
(-1.4)
A 		5.8
(3)
A 		5
avr 1.7
(-2.9) 		6.4
(3) 		1.6
(-3) 		3.2
(-1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		2.6
(-1.9)
A 		0.7
(-3)
A 		8.8
(1.8)
A 		5.2
(-0.4)
A 		10.9
(3)
A 		10
B 1.3
(-3)
A 		1.6
(-2.9)
A 		1.9
(-2.8)
A 		2.2
(-2.7)
A 		2.8
(-2.5)
A 		21.2
(3)
A 		20
C 0.6
(-3)
A 		2.7
(-2.5)
A 		0.6
(-3)
A 		1.1
(-2.9)
A 		2.4
(-2.5)
A 		24.5
(3)
A 		24
avr 1
(-3) 		2.3
(-2.6) 		1.1
(-3) 		4
(-2) 		3.5
(-2.2) 		18.9
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9400
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.11 NCBI
Target Description Y105C5B.11 /REP_DB=WormBase Gene ID /WP=CE24060 /TR=Q9U313 /GB=CAB60315.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070499 NCBI Caenorhabditis elegans Y105C5B.11 (Y105C5B.11) mRNA, complete cds. 11/11 None
Y105C5B.11 ENSEMBL cdna:known chromosome:CEL140:IV:15937074:15941453:-1 gene:Y105C5B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018394 8/11 Cross Hyb Matching Probes None
GENEFINDER00000018445 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15937079-15941459(-) 95.67 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.11
Entrez Gene 190893 Entrez gene
SwissProt Q9U313 EMBL-EBI
WormBase CE36220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60315 Hypothetical protein Y105C5B.11 [Caenorhabditis elegans] ref|NP_502900.2| Y105C5B.11 [Caenorhabditis elegans] 0.0
blast T26384 hypothetical protein Y105C5B.h - Caenorhabditis elegans 0.0
blast CAE60653 Hypothetical protein CBG04303 [Caenorhabditis briggsae] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.2E-5
Sequence
Target Sequence 
>C. ELEGANS:186898_AT
cctcaccagatgtaccacttgacaagaagaagctgaaacggcagaagcagaagctgagaa
aggcggcggagccgccagagccaactccaccgccaccaccacccgtcatacccgtaccag
aagcaaagccctgcgagaaatgcttcagaaccagtgaacgatgcaacaaggcaaatgccg
aattaaagaccagtttgaataaaatcaaaatactcgagaaaaagctttcggctgaaaaaa
gagctttcaaggaaaaccaggaaacttgggaaaagaagttggaagaacttcaaactgaat
tgcaagctaaagaaaggaccattcaagagttccaagataaagtggctccaaaatgtgcag
aatctgtatcggatgggttcttgagagacggagaagaactcattgcgacctttgatgtga
cgtcatcaaatgccactgaagaatttgaatccgaatgtatcatttgtagagaagatattg
atttggaaaatggaacagttcaatgcccgcggtgcactgaaatttatcattcccattgtg
caactcaatggctatcgcaaaaacctacttgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCACCAGATGTACCACTTGACAA 85 267 1811 Antisense
AAAGGCGGCGGAGCCGCCAGAGCCA 355 121 1869 Antisense
GTCATACCCGTACCAGAAGCAAAGC 706 465 1915 Antisense
AGCCCTGCGAGAAATGCTTCAGAAC 363 83 1937 Antisense
GTATCGGATGGGTTCTTGAGAGACG 646 453 2176 Antisense
GAACTCATTGCGACCTTTGATGTGA 387 349 2206 Antisense
TGACGTCATCAAATGCCACTGAAGA 688 567 2228 Antisense
TCAATGCCCGCGGTGCACTGAAATT 560 633 2310 Antisense
ATTTATCATTCCCATTGTGCAACTC 352 15 2332 Antisense
TTGTGCAACTCAATGGCTATCGCAA 191 707 2346 Antisense
GGCTATCGCAAAAACCTACTTGTCC 94 539 2360 Antisense
Sequence Source Affymetrix Proprietary Database