[Home] | [Total List]

[186897_at]

Description B0285.4 /REP_DB=WormBase Gene ID /WP=CE00643 /TR=SW:P46554 /GB=CAA84295.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 73      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 56      6grp_high1_sub > 03_04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 644.2
(-2.7)
P 		938.2
(2.3)
P 		978.2
(3)
P 		625.5
(-3)
P 		353
B 654.3
(-2.3)
P 		867.5
(0.6)
P 		1047.3
(3)
P 		599.5
(-3)
P 		448
C 666.6
(-3)
P 		856.9
(3)
P 		855.6
(3)
P 		740.8
(-0.7)
P 		190
avr 655
(-3) 		887.5
(1.6) 		960.4
(3) 		655.3
(-3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 528.3
(-3)
P 		804.5
(-0.4)
P 		1171.2
(3)
P 		1076.8
(2.1)
P 		913.5
(0.6)
P 		929.1
(0.7)
P 		643
B 579.4
(-3)
P 		857.5
(0.3)
P 		1021.9
(2.3)
P 		1078.9
(3)
P 		860.4
(0.4)
P 		1015.2
(2.2)
P 		500
C 731.1
(-3)
P 		863.2
(-0.5)
P 		966.6
(1.4)
P 		1000
(2)
P 		995.4
(1.9)
P 		1053.6
(3)
P 		323
avr 612.9
(-3) 		841.7
(0.1) 		1053.2
(3) 		1051.9
(3) 		923.1
(1.2) 		999.3
(2.3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 234.6
(2.2)
P 		203.6
(1.1)
P 		255.7
(3)
P 		91.6
(-3)
P 		164
B 208.7
(1.2)
P 		214.3
(1.5)
P 		242.7
(3)
P 		127.8
(-3)
P 		115
C 220.7
(0.3)
P 		246.4
(1.2)
P 		298.2
(3)
P 		124.9
(-3)
P 		173
avr 221.3
(1.2) 		221.4
(1.2) 		265.5
(3) 		114.8
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 97.4
(-3)
P 		286.1
(3)
P 		255.1
(2)
P 		273.1
(2.6)
P 		275.7
(2.7)
P 		226.2
(1.1)
P 		189
B 201.6
(-3)
P 		285.4
(-0.2)
P 		248.2
(-1.4)
P 		285.8
(-0.1)
P 		349.6
(2)
P 		378.6
(3)
P 		177
C 271
(-0.2)
P 		263.4
(-0.5)
P 		246
(-1.2)
P 		201.1
(-3)
P 		322.1
(1.8)
P 		352.7
(3)
P 		152
avr 190
(-3) 		278.3
(1.1) 		249.8
(-0.2) 		253.3
(-0.1) 		315.8
(2.8) 		319.2
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7167
Sequence Type Exemplar sequence
Representative Public ID B0285.4 NCBI
Target Description B0285.4 /REP_DB=WormBase Gene ID /WP=CE00643 /TR=SW:P46554 /GB=CAA84295.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065474 NCBI Caenorhabditis elegans B0285.4 (B0285.4) mRNA, complete cds. 11/11 None
SNAP00000026083 ENSEMBL cdna:SNAP chromosome:CEL140:III:4343430:4345041:1 11/11 None
GENEFINDER00000026097 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4343430:4345041:1 11/11 None
B0285.4 ENSEMBL cdna:known chromosome:CEL140:III:4343430:4345191:1 gene:B0285.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4343429-4345041(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0285.4
Entrez Gene 175561 Entrez gene
SwissProt P46554 EMBL-EBI
WormBase CE00643 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264171_AT leucine carboxyl methyltransferase family protein at
CANINE_2:CFA.17942.1.S1_AT similar to Leucine carboxyl methyltransferase 1 (Protein-leucine O-methyltransferase) cfa
CANINE_2:CFA.17942.1.S1_S_AT similar to Leucine carboxyl methyltransferase 1 (Protein-leucine O-methyltransferase) cfa
DROSOPHILA_2:1627114_AT dm
DROSGENOME1:152854_AT dm
CHICKEN:GGAAFFX.3716.1.S1_S_AT leucine carboxyl methyltransferase 1 gga
HG-U133_PLUS_2:221515_S_AT leucine carboxyl methyltransferase 1 hs
HG-U133A:221515_S_AT leucine carboxyl methyltransferase 1 hs
HG-U133A_2:221515_S_AT leucine carboxyl methyltransferase 1 hs
HU35KSUBA:RC_AA236037_AT leucine carboxyl methyltransferase 1 hs
U133_X3P:G12654744_3P_S_AT leucine carboxyl methyltransferase 1 hs
HG-U95B:46295_AT leucine carboxyl methyltransferase 1 hs
HU35KSUBC:RC_R77975_AT Leucine carboxyl methyltransferase 1 hs
U133_X3P:HS2.337730.1.S1_3P_S_AT Leucine carboxyl methyltransferase 1 hs
HG-U133_PLUS_2:1558007_S_AT Leucine carboxyl methyltransferase 1 hs
MG-U74CV2:165442_AT leucine carboxyl methyltransferase 1 mm
MOE430A:1417044_AT leucine carboxyl methyltransferase 1 mm
MOUSE430A_2:1417044_AT leucine carboxyl methyltransferase 1 mm
MOUSE430_2:1417044_AT leucine carboxyl methyltransferase 1 mm
MU19KSUBA:TC14775_AT Leucine carboxyl methyltransferase 1, mRNA (cDNA clone IMAGE:3595687) mm
RAE230A:1388747_AT leucine carboxyl methyltransferase 1 rn
RAT230_2:1388747_AT leucine carboxyl methyltransferase 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA84295 Hypothetical protein B0285.4 [Caenorhabditis elegans] ref|NP_497875.1| B0285.4 [Caenorhabditis elegans] sp|P46554|YKG4_CAEEL Hypothetical protein B0285.4 in chromosome III 1.0E-177
blast CAE71223 Hypothetical protein CBG18087 [Caenorhabditis briggsae] 1.0E-157
blast EAL33231 GA17689-PA [Drosophila pseudoobscura] 1.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR007213 EMBL-EBI Leucine carboxyl methyltransferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186897_AT
aagttgatttctcatcagtcacttctaaaaagatccgtcatattttgaagccaatcggac
cgaatagtgttgatttgaagaaatcttttgaaagtgatgctgtagtctcacatcatgcgg
atcttcacgctggaaactatcatttaattggtgcagatttgcggcaggctaatgagttgg
atcaaaagttggcaacatgccaactttctcatgatattcctacaatttttatcgcagaat
gcgttctggtttacatgtcagctgattcaagtactgctctcctgaaacaaattgtatctc
aattcaaacaacctgcattcgtcaactacgaacaattccgaacttctgatgcattcacca
aagttatggaacaaaatttgggagatcgaggaatccaacttcacggtctggaaatgtgtg
aaagtgctgagaaacaggaggagagattccgaaatgctggtttcaaagaggtcaaagtta
tggatatgaaccaaattttcaacaatttcctggatcagaaggaagtttcaagaatccgcg
aaatcgaaatgctcgacgaaatggaactccttcagcaactttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGATTTCTCATCAGTCACTTC 222 157 398 Antisense
GTAGTCTCACATCATGCGGATCTTC 256 457 499 Antisense
GCGGATCTTCACGCTGGAAACTATC 158 293 514 Antisense
ATTGGTGCAGATTTGCGGCAGGCTA 338 3 544 Antisense
GCCAACTTTCTCATGATATTCCTAC 145 279 596 Antisense
ATGCGTTCTGGTTTACATGTCAGCT 647 41 636 Antisense
AGCTGATTCAAGTACTGCTCTCCTG 221 79 657 Antisense
CAAACAACCTGCATTCGTCAACTAC 479 191 702 Antisense
TCGAGGAATCCAACTTCACGGTCTG 234 603 783 Antisense
AATGCTCGACGAAATGGAACTCCTT 102 165 945 Antisense
TGGAACTCCTTCAGCAACTTTTTGC 574 545 959 Antisense
Sequence Source Affymetrix Proprietary Database