[Home] | [Total List]

[186896_at]

Description W10G11.17 /REP_DB=WormBase Gene ID /WP=CE14832 /TR=O44918 /GB=AAG24223.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 6.2
(-3)
A 		25.1
(3)
A 		9
(-2.1)
A 		6.7
(-2.8)
A 		19
B 10.8
(3)
A 		6.1
(-3)
A 		9.4
(1.2)
A 		9
(0.7)
A 		5
C 26.2
(3)
A 		11.4
(-1.4)
A 		7.5
(-2.6)
A 		6
(-3)
A 		20
avr 14.4
(3) 		14.2
(2.8) 		8.6
(-1.8) 		7.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 9.9
(1.3)
A 		5.7
(-2.2)
A 		4.8
(-3)
A 		8.7
(0.3)
A 		11.9
(3)
A 		8.4
(0)
A 		7
B 8.1
(-2.3)
A 		12.1
(-1.6)
A 		8.7
(-2.2)
A 		41.5
(3)
A 		9.9
(-2)
A 		3.4
(-3)
A 		38
C 15.6
(3)
A 		6.3
(-2.1)
A 		6.1
(-2.2)
A 		9.3
(-0.5)
A 		7.7
(-1.3)
A 		4.7
(-3)
A 		11
avr 11.2
(-0.6) 		8
(-2) 		6.5
(-2.6) 		19.8
(3) 		9.8
(-1.2) 		5.5
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.3
(-1.3)
A 		5.5
(3)
A 		2.4
(-1.1)
A 		1
(-3)
A 		5
B 3.5
(3)
A 		1.5
(-3)
A 		2.2
(-0.9)
A 		1.9
(-1.8)
A 		2
C 8.7
(3)
A 		3.3
(-1.2)
A 		2.6
(-1.8)
A 		1
(-3)
A 		8
avr 4.8
(3) 		3.4
(0.6) 		2.4
(-1.1) 		1.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.8
(-1.2)
A 		2
(-0.7)
A 		1
(-3)
A 		2.2
(-0.2)
A 		3.6
(3)
A 		2.1
(-0.5)
A 		3
B 2.8
(-2.1)
A 		4
(-1.3)
A 		2.1
(-2.5)
A 		11
(3)
A 		4
(-1.3)
A 		1.3
(-3)
A 		10
C 5.8
(3)
A 		1.9
(-2.4)
A 		1.5
(-3)
A 		1.9
(-2.4)
A 		2.5
(-1.6)
A 		1.6
(-2.9)
A 		4
avr 3.5
(0.4) 		2.6
(-1.1) 		1.5
(-3) 		5
(3) 		3.4
(0.3) 		1.7
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5276
Sequence Type Exemplar sequence
Representative Public ID W10G11.17 NCBI
Target Description W10G11.17 /REP_DB=WormBase Gene ID /WP=CE14832 /TR=O44918 /GB=AAG24223.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062177 NCBI Caenorhabditis elegans W10G11.17 (W10G11.17) mRNA, complete cds. 11/11 None
SNAP00000013260 ENSEMBL cdna:SNAP chromosome:CEL140:II:3563723:3567340:1 11/11 None
GENEFINDER00000013274 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3562870:3567340:1 11/11 None
W10G11.17 ENSEMBL cdna:known chromosome:CEL140:II:3563723:3565831:1 gene:W10G11.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3563721-3565830(+) 98.26 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.17
Entrez Gene 189345 Entrez gene
SwissProt O44918 EMBL-EBI
WormBase CE14832 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24223 Hypothetical protein W10G11.17 [Caenorhabditis elegans] ref|NP_494578.1| W10G11.17 [Caenorhabditis elegans] 0.0
blast AAG24222 Hypothetical protein W10G11.16 [Caenorhabditis elegans] ref|NP_494579.1| W10G11.16 [Caenorhabditis elegans] 0.0
blast CAE73804 Hypothetical protein CBG21354 [Caenorhabditis briggsae] 0.0
blast AAG24222 Hypothetical protein W10G11.16 [Caenorhabditis elegans] ref|NP_494579.1| W10G11.16 [Caenorhabditis elegans] 1.0E-177
blast CAE73804 Hypothetical protein CBG21354 [Caenorhabditis briggsae] 1.0E-175
blast CAE73805 Hypothetical protein CBG21355 [Caenorhabditis briggsae] 1.0E-158
blast AAZ42341 GABA-A receptor [Caenorhabditis remanei] 1.0E-107
blast AAG24223 Hypothetical protein W10G11.17 [Caenorhabditis elegans] ref|NP_494578.1| W10G11.17 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 2.2E-7
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.7E-42
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 1.1E-9
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.7E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000013260 1 857-874
GENEFINDER00000013274 4 878-900,907-926,941-963,1005-1027
Sequence
Target Sequence 
>C. ELEGANS:186896_AT
gtagacgccatgttgtcctcaaaacaaaaatccgaagaagaagaagaagaaaaagagcag
ctggctccgatgaagaggacgagaagaagagtagcgagactgtgattgatgtgcaccagg
atagtggggaaaatgatgaggactggttgaatgtgcgccaagtgatcaagaccacggatg
gtgagactactgtagcaatcattgaggagaggagccacttgttggatggaaattccaccg
atgtgcgcgcctggattgagattgatgcttcggatcttatcaacccgaccctgctaatct
cctccccagaagccgtagcggcactcggcctggaggtagaggcaacagcgtttcaaagat
ttgagaacgttgggttatacctcccggggatttgttcagagtatgtgccaaaagctatcg
atgagtttaacagtagtagttttgaaggaattgagatcgaaggcccgattggtgtgaata
taactgctctggagcttgctggggtgaacctgacgagccttgccgataagctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGACGCCATGTTGTCCTCAAAAC 661 453 743 Antisense
GAATGTGCGCCAAGTGATCAAGACC 594 331 891 Antisense
ATGTGCGCGCCTGGATTGAGATTGA 591 49 983 Antisense
TGATGCTTCGGATCTTATCAACCCG 33 567 1005 Antisense
CCCAGAAGCCGTAGCGGCACTCGGC 299 259 1047 Antisense
GGCACTCGGCCTGGAGGTAGAGGCA 132 535 1062 Antisense
TGAGAACGTTGGGTTATACCTCCCG 413 567 1104 Antisense
TACCTCCCGGGGATTTGTTCAGAGT 191 651 1120 Antisense
ATAACTGCTCTGGAGCTTGCTGGGG 371 25 1222 Antisense
CTTGCTGGGGTGAACCTGACGAGCC 137 219 1237 Antisense
CTGACGAGCCTTGCCGATAAGCTTA 414 237 1252 Antisense
Sequence Source Affymetrix Proprietary Database