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[186895_at]

Description Y51H7BR.7 /REP_DB=WormBase Gene ID /WP=CE25376 /TR=Q9N3K1 /GB=AAF60750.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 40.6
(1.7)
A 		42.8
(3)
A 		35.5
(-1.4)
A 		32.8
(-3)
A 		10
B 75.5
(3)
A 		19.3
(-3)
A 		20.6
(-2.9)
A 		54.6
(0.8)
A 		56
C 50.6
(-1.8)
A 		39.2
(-3)
A 		39.8
(-2.9)
A 		98.2
(3)
A 		59
avr 55.6
(1.7) 		33.8
(-2.6) 		32
(-3) 		61.9
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 60.6
(3)
A 		13
(-2.6)
A 		47.6
(1.5)
A 		16.2
(-2.2)
A 		9.6
(-3)
A 		13.8
(-2.5)
A 		51
B 47.2
(-0)
A 		77.3
(3)
A 		72
(2.5)
A 		18
(-3)
A 		26.2
(-2.2)
A 		26.7
(-2.1)
A 		59
C 4.6
(-2.9)
A 		41.6
(3)
A 		4
(-3)
A 		4.9
(-2.9)
A 		26.3
(0.6)
A 		33.8
(1.8)
A 		38
avr 37.5
(1.7) 		44
(3) 		41.2
(2.5) 		13
(-3) 		20.7
(-1.5) 		24.8
(-0.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.8
(3)
A 		9.3
(-0.3)
A 		9.3
(-0.3)
A 		4.8
(-3)
A 		10
B 24.1
(3)
A 		4.8
(-3)
A 		4.8
(-3)
A 		11.6
(-0.9)
A 		19
C 16.8
(3)
A 		11.3
(-3)
A 		13.9
(-0.2)
A 		16.6
(2.8)
A 		6
avr 18.6
(3) 		8.5
(-3) 		9.3
(-2.5) 		11
(-1.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.2
(3)
A 		4.6
(-1.8)
A 		10.4
(2.4)
A 		4.1
(-2.1)
A 		2.9
(-3)
A 		3.4
(-2.6)
A 		8
B 16.4
(0.3)
A 		25.7
(3)
A 		17.5
(0.6)
A 		4.8
(-3)
A 		10.7
(-1.3)
A 		9.9
(-1.5)
A 		21
C 1.7
(-2.6)
A 		12.7
(3)
A 		1
(-3)
A 		1
(-3)
A 		8.5
(0.8)
A 		11.3
(2.3)
A 		12
avr 9.8
(0.5) 		14.3
(3) 		9.6
(0.4) 		3.3
(-3) 		7.4
(-0.8) 		8.2
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4893
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.7 NCBI
Target Description Y51H7BR.7 /REP_DB=WormBase Gene ID /WP=CE25376 /TR=Q9N3K1 /GB=AAF60750.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061584 NCBI Caenorhabditis elegans Y51H7BR.7 (Y51H7BR.7) mRNA, complete cds. 11/11 None
GENEFINDER00000028998 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1516599:1525412:-1 11/11 None
Y51H7BR.7 ENSEMBL cdna:known chromosome:CEL140:II:1523569:1525604:-1 gene:Y51H7BR.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1523567-1525411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7BR.7
Entrez Gene 173527 Entrez gene
SwissProt Q9N3K1 EMBL-EBI
WormBase CE25376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL05589 Hypothetical protein Y51H7BM.1 [Caenorhabditis elegans] ref|NP_493983.3| Y51H7BM.1 [Caenorhabditis elegans] 3.0E-71
blast AAF60750 Hypothetical protein Y51H7BR.7 [Caenorhabditis elegans] ref|NP_493985.1| Y51H7BR.7 [Caenorhabditis elegans] 4.0E-64
blast AAF60750 Hypothetical protein Y51H7BR.7 [Caenorhabditis elegans] ref|NP_493985.1| Y51H7BR.7 [Caenorhabditis elegans] 9.0E-60
blast CAE62890 Hypothetical protein CBG07077 [Caenorhabditis briggsae] 2.0E-42
blast CAE62890 Hypothetical protein CBG07077 [Caenorhabditis briggsae] 5.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.1E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493985.1 1 54-76
Y51H7BR.7 1 54-76
GENEFINDER00000028998 8 55-77,232-254,284-306,313-335,340-362,369-391,422-444,465-487
Sequence
Target Sequence 
>C. ELEGANS:186895_AT
gcttgcgtgtttggcggaactatggttaaggattatgatgaatatttggacttcgatgag
gagccccaatcgcgaacggaacacgagaaaacgtcggctttcgggtaccagcaccacgga
tttttccgagcagaaatcccaattatgccactgagccttgcggtgctctgctgcttcttg
aatatgctaatcccggggctcggaacgttttgggcggctctgtcggtgctctgctgctcg
gattccgggaggagctccactttcagatgttttatggttaatttgttggcggctatgttg
cagacattgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGCGTGTTTGGCGGAACTATGG 213 307 22 Antisense
TGGACTTCGATGAGGAGCCCCAATC 264 547 68 Antisense
CCCCAATCGCGAACGGAACACGAGA 544 261 85 Antisense
GAACACGAGAAAACGTCGGCTTTCG 49 353 100 Antisense
GAAATCCCAATTATGCCACTGAGCC 134 363 154 Antisense
TGCTCTGCTGCTTCTTGAATATGCT 247 581 185 Antisense
AATATGCTAATCCCGGGGCTCGGAA 92 173 202 Antisense
CTCTGCTGCTCGGATTCCGGGAGGA 373 231 250 Antisense
TCGGATTCCGGGAGGAGCTCCACTT 418 605 259 Antisense
ATGGTTAATTTGTTGGCGGCTATGT 255 49 295 Antisense
GGCGGCTATGTTGCAGACATTGCCA 447 541 309 Antisense
Sequence Source Affymetrix Proprietary Database