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[186894_at]

Description Y116F11B.9 /REP_DB=WormBase Gene ID /WP=CE24164 /TR=Q9NEJ9 /GB=CAB81978.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3.3
(-3)
A 		3.5
(-2.9)
A 		6.9
(-1.9)
A 		23.5
(3)
A 		20
B 6.1
(-1.8)
A 		18.1
(3)
A 		4.3
(-2.6)
A 		3.2
(-3)
A 		15
C 16.9
(-1.6)
A 		11.5
(-3)
A 		34.1
(3)
A 		15.8
(-1.9)
A 		23
avr 8.8
(-3) 		11
(-0.9) 		15.1
(3) 		14.2
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 54.2
(2.1)
A 		27
(-0.7)
A 		5.1
(-2.9)
A 		63.7
(3)
P 		49.4
(1.6)
A 		3.7
(-3)
A 		60
B 11.7
(-2.3)
A 		7.9
(-3)
A 		23.8
(-0.3)
A 		42.7
(3)
A 		34.1
(1.5)
P 		24.4
(-0.2)
A 		35
C 5.1
(-3)
A 		15
(-1.9)
A 		19.8
(-1.3)
A 		7.6
(-2.7)
A 		57.1
(3)
P 		6.7
(-2.8)
A 		52
avr 23.7
(-0.9) 		16.6
(-2.2) 		16.2
(-2.2) 		38
(1.5) 		46.9
(3) 		11.6
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.2
(-2.1)
A 		0.8
(-3)
A 		1.8
(-0.7)
A 		3.4
(3)
A 		3
B 2
(-0.9)
A 		4.5
(3)
A 		1
(-2.5)
A 		0.7
(-3)
A 		4
C 5.6
(-1.1)
A 		3.3
(-2.6)
A 		11.9
(3)
A 		2.7
(-3)
A 		9
avr 2.9
(-1.6) 		2.9
(-1.6) 		4.9
(3) 		2.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10
(0.6)
A 		9.6
(0.4)
A 		1.1
(-2.9)
A 		16.2
(3)
P 		14.9
(2.5)
A 		0.9
(-3)
A 		15
B 4.1
(-2.2)
A 		2.6
(-3)
A 		5.8
(-1.3)
A 		11.3
(1.7)
A 		13.8
(3)
P 		9.1
(0.5)
A 		11
C 1.9
(-2.9)
A 		4.6
(-1.9)
A 		5
(-1.8)
A 		1.5
(-3)
A 		18.5
(3)
P 		2.2
(-2.8)
A 		17
avr 5.3
(-2.3) 		5.6
(-2.2) 		4
(-3) 		9.7
(-0.1) 		15.7
(3) 		4.1
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14457
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.9 NCBI
Target Description Y116F11B.9 /REP_DB=WormBase Gene ID /WP=CE24164 /TR=Q9NEJ9 /GB=CAB81978.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029047(11), NR_002406(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029047 NCBI Caenorhabditis elegans Y116F11B.9a (Y116F11B.9) mRNA, complete cds. 11/11 None
NR_002406 NCBI Caenorhabditis elegans Y116F11B.9, miscRNA. 9/11 None
GENEFINDER00000031783 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19859724:19865980:-1 11/11 None
Y116F11B.9 ENSEMBL cdna:known chromosome:CEL140:V:19859724:19865980:-1 gene:Y116F11B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19859723-19865980(-) 68.16 100.0
Public Domain and Genome References
Ensembl Y116F11B.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB81978 Hypothetical protein Y116F11B.9a [Caenorhabditis elegans] ref|NP_001024218.1| Y116F11B.9a [Caenorhabditis elegans] 0.0
blast CAE58065 Hypothetical protein CBG01144 [Caenorhabditis briggsae] 1.0E-174
blast CAE58065 Hypothetical protein CBG01144 [Caenorhabditis briggsae] 1.0E-170
blast AAA82261 Hypothetical protein C33H5.2 [Caenorhabditis elegans] ref|NP_501294.1| C33H5.2 [Caenorhabditis elegans] sp|Q18416|YY42_CAEEL Hypothetical protein C33H5.2 in chromosome IV 1.0E-128
blast AAA82261 Hypothetical protein C33H5.2 [Caenorhabditis elegans] ref|NP_501294.1| C33H5.2 [Caenorhabditis elegans] sp|Q18416|YY42_CAEEL Hypothetical protein C33H5.2 in chromosome IV 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.7E-119
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.8E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024218.1 1 12-34
Y116F11B.9 1 12-34
GENEFINDER00000031783 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:186894_AT
caaagcgttcttctgagttttccatctcgaaaatgctgaaaaatttgaaatttcgcgacg
ggaattttggctccggacaaaaaattgtggcaaatccgaggtacttaaattatacgtgga
ttgagccgacgagtttttcgatggctggaactagttatgtggatactgataaaaatgtta
taactcaattggataatattaaatggacaaactcaatctccactacctcccaggctccct
tgtatctcaactcctccgaatacctaatttcaccagaaaacctcgaggacctcgactcag
acttccagaaaatgcaaaaatccttcgaaatcgaccaaattcttccggatcttcccagca
aactttattatttcaattcagttcgcagttgtctgacgaaaaaatatttcaactacgtaa
aattggaaaaatacggaaaaacccagtgtccgggaccccaaatgtgtaaatttcaaaagc
gatggggtgttcagtgtgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGCGTTCTTCTGAGTTTTCCAT 285 191 953 Antisense
GCGACGGGAATTTTGGCTCCGGACA 616 289 1007 Antisense
TTGAGCCGACGAGTTTTTCGATGGC 359 701 1073 Antisense
TGGACAAACTCAATCTCCACTACCT 384 547 1156 Antisense
TCAACTCCTCCGAATACCTAATTTC 318 629 1199 Antisense
TTTCACCAGAAAACCTCGAGGACCT 567 671 1220 Antisense
ATCGACCAAATTCTTCCGGATCTTC 163 35 1282 Antisense
GGATCTTCCCAGCAAACTTTATTAT 85 511 1299 Antisense
AATTCAGTTCGCAGTTGTCTGACGA 655 173 1327 Antisense
CAGTGTCCGGGACCCCAAATGTGTA 155 209 1396 Antisense
AAGCGATGGGGTGTTCAGTGTGTAC 649 147 1429 Antisense
Sequence Source Affymetrix Proprietary Database