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[186892_at]

Description W10G11.12 /REP_DB=WormBase Gene ID /WP=CE14822 /TR=O44910 /GB=AAG24219.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 106
(-2.4)
M 		175.1
(3)
A 		137.8
(0.1)
M 		97.7
(-3)
A 		77
B 116.8
(-2.8)
A 		144.3
(3)
A 		116.7
(-2.9)
A 		116
(-3)
M 		28
C 78.8
(-3)
A 		152.8
(3)
M 		127.3
(0.9)
A 		135
(1.6)
A 		74
avr 100.5
(-3) 		157.4
(3) 		127.3
(-0.2) 		116.2
(-1.3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 133.5
(3)
A 		83.3
(-1.6)
A 		88
(-1.2)
A 		101.3
(0)
A 		116.7
(1.4)
M 		68.6
(-3)
A 		65
B 113.9
(0.9)
A 		112.3
(0.8)
A 		138.8
(3)
P 		66.3
(-3)
P 		95.7
(-0.6)
M 		85.6
(-1.4)
M 		73
C 70.9
(-1)
A 		106.7
(2.1)
P 		116.6
(3)
A 		62
(-1.8)
A 		48
(-3)
A 		67.4
(-1.3)
A 		69
avr 106.1
(1.8) 		100.8
(1) 		114.5
(3) 		76.5
(-2.6) 		86.8
(-1.1) 		73.9
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 38.6
(3)
M 		38
(2.9)
A 		36
(2.4)
M 		14.3
(-3)
A 		24
B 37.2
(3)
A 		35.6
(2.2)
A 		27
(-1.9)
A 		24.7
(-3)
M 		13
C 26.1
(-2.1)
A 		43.9
(2.9)
M 		44.4
(3)
A 		22.8
(-3)
A 		22
avr 34
(1.3) 		39.2
(3) 		35.8
(1.9) 		20.6
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 24.6
(-0.4)
A 		29.6
(1.2)
A 		19.2
(-2.2)
A 		25.7
(-0.1)
A 		35.2
(3)
M 		16.7
(-3)
A 		19
B 39.6
(3)
A 		37.4
(2.4)
A 		33.7
(1.4)
P 		17.5
(-3)
P 		38.9
(2.8)
M 		31.9
(0.9)
M 		22
C 26.3
(1.1)
A 		32.5
(3)
P 		29.7
(2.2)
A 		12.5
(-3)
A 		15.5
(-2.1)
A 		22.5
(0)
A 		20
avr 30.2
(1.8) 		33.2
(3) 		27.5
(0.7) 		18.6
(-3) 		29.9
(1.6) 		23.7
(-0.9) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5217
Sequence Type Exemplar sequence
Representative Public ID W10G11.12 NCBI
Target Description W10G11.12 /REP_DB=WormBase Gene ID /WP=CE14822 /TR=O44910 /GB=AAG24219.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062185 NCBI Caenorhabditis elegans W10G11.12 (W10G11.12) mRNA, complete cds. 11/11 None
SNAP00000013267 ENSEMBL cdna:SNAP chromosome:CEL140:II:3578415:3579025:1 11/11 None
GENEFINDER00000013276 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3578415:3579289:1 11/11 None
W10G11.12 ENSEMBL cdna:known chromosome:CEL140:II:3578415:3579025:1 gene:W10G11.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3578413-3579024(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.12
Entrez Gene 189342 Entrez gene
SwissProt O44910 EMBL-EBI
WormBase CE14822 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24219 Hypothetical protein W10G11.12 [Caenorhabditis elegans] ref|NP_494586.1| W10G11.12 [Caenorhabditis elegans] 1.0E-100
blast AAG24219 Hypothetical protein W10G11.12 [Caenorhabditis elegans] ref|NP_494586.1| W10G11.12 [Caenorhabditis elegans] 6.0E-90
blast CAE70944 Hypothetical protein CBG17752 [Caenorhabditis briggsae] 1.0E-58
blast AAB66113 Hypothetical protein W09G10.5 [Caenorhabditis elegans] ref|NP_494567.1| W09G10.5 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.1E-7
Sequence
Target Sequence 
>C. ELEGANS:186892_AT
ggctctgtgcttgcaacagtaccagttgccactaaatgcccagacacctggaaatggttc
aagagatccagaggcggttggtgtatgaaggtcttcgccgcgattggaactcaagcagac
gctgaagccaagtgcaaagcggaaggagcagtggtggcaggagttcagaacactgaggag
atcaagtggatgtcagcaactctccaatccctccaaacaaatcccgtaggtaccctgtgg
gttggcgccaagcgtaccaaaccgtgcatctcctctggattaaccaagcagtgctccgcg
atcacctccttctactggtctgaccagtctgccgtcggtgttcaaggattcttctggcgg
gcgggagagccaaacaatgcactaggcgggcagggttgtgcccaggtgtactccaccact
aatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCTGTGCTTGCAACAGTACCAG 183 539 46 Antisense
CCAGTTGCCACTAAATGCCCAGACA 266 273 67 Antisense
GAAGGTCTTCGCCGCGATTGGAACT 120 333 132 Antisense
GGAACTCAAGCAGACGCTGAAGCCA 546 529 151 Antisense
AGTGGATGTCAGCAACTCTCCAATC 479 59 230 Antisense
GTGCATCTCCTCTGGATTAACCAAG 151 481 309 Antisense
TTAACCAAGCAGTGCTCCGCGATCA 665 683 325 Antisense
CCAGTCTGCCGTCGGTGTTCAAGGA 597 271 369 Antisense
GTGTTCAAGGATTCTTCTGGCGGGC 36 485 383 Antisense
TAGGCGGGCAGGGTTGTGCCCAGGT 311 647 428 Antisense
CCCAGGTGTACTCCACCACTAATGA 19 259 446 Antisense
Sequence Source Affymetrix Proprietary Database