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[186891_at]

Description K01B6.2 /REP_DB=WormBase Gene ID /WP=CE00239 /TR=SW:P34490 /GB=CAA80129.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 46      6grp_cgc > 31      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 304.2
(3)
P 		110.8
(-1.7)
A 		61.9
(-2.8)
A 		55.4
(-3)
A 		249
B 338.4
(3)
P 		100.2
(-2.3)
A 		90
(-2.6)
A 		70.2
(-3)
A 		268
C 409.3
(3)
P 		116
(-2.4)
A 		81.5
(-3)
A 		85.7
(-2.9)
M 		328
avr 350.6
(3) 		109
(-2.2) 		77.8
(-2.8) 		70.4
(-3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 352.9
(3)
P 		283.5
(1.5)
P 		188.7
(-0.6)
P 		212
(-0)
P 		117.4
(-2.1)
M 		75.7
(-3)
A 		277
B 311.6
(3)
M 		294.2
(2.6)
P 		131.7
(-1)
P 		177.7
(-0)
M 		134.8
(-1)
P 		44
(-3)
A 		268
C 310.9
(3)
P 		230.9
(1.1)
P 		206.7
(0.5)
A 		164.8
(-0.5)
A 		135.3
(-1.3)
A 		63
(-3)
A 		248
avr 325.1
(3) 		269.5
(1.7) 		175.7
(-0.4) 		184.8
(-0.2) 		129.2
(-1.4) 		60.9
(-3) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 110.8
(3)
P 		24
(-2.1)
A 		16.2
(-2.5)
A 		8.1
(-3)
A 		103
B 107.9
(3)
P 		24.7
(-2.4)
A 		20.9
(-2.6)
A 		15
(-3)
A 		93
C 135.5
(3)
P 		33.3
(-2.1)
A 		28.4
(-2.3)
A 		14.4
(-3)
M 		121
avr 118.1
(3) 		27.3
(-2.2) 		21.8
(-2.5) 		12.5
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 65.1
(0.4)
P 		100.8
(3)
P 		41.1
(-1.3)
P 		53.8
(-0.4)
P 		35.4
(-1.8)
M 		18.4
(-3)
A 		82
B 108.4
(3)
M 		97.9
(2.3)
P 		32
(-2)
P 		47.1
(-1)
M 		54.8
(-0.5)
P 		16.4
(-3)
A 		92
C 115.2
(3)
P 		70.5
(0.1)
P 		52.6
(-1)
A 		33.1
(-2.2)
A 		43.8
(-1.6)
A 		21.1
(-3)
A 		94
avr 96.2
(3) 		89.7
(2.5) 		41.9
(-1.2) 		44.7
(-1) 		44.7
(-1) 		18.6
(-3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6645
Sequence Type Exemplar sequence
Representative Public ID K01B6.2 NCBI
Target Description K01B6.2 /REP_DB=WormBase Gene ID /WP=CE00239 /TR=SW:P34490 /GB=CAA80129.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066648(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066648 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-45) (srx-45) mRNA, complete cds. 10/11 None
SNAP00000010286 ENSEMBL cdna:SNAP chromosome:CEL140:III:9303933:9305105:-1 10/11 None
GENEFINDER00000010288 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9303933:9306586:-1 10/11 None
K01B6.2 ENSEMBL cdna:known chromosome:CEL140:III:9303933:9306595:-1 gene:K01B6.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9304013-9304853(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srx-45
Ensembl K01B6.2
Entrez Gene 186838 Entrez gene
SwissProt P34490 EMBL-EBI
WormBase CE37779 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80129 Hypothetical protein K01B6.2 [Caenorhabditis elegans] ref|NP_499049.2| Serpentine Receptor, class X family member (srx-45) [Caenorhabditis elegans] sp|P34490|SRX45_CAEEL Serpentine receptor class X 45 (Srx-45 protein) 0.0
blast CAE65249 Hypothetical protein CBG10133 [Caenorhabditis briggsae] 0.0
blast CAA80129 Hypothetical protein K01B6.2 [Caenorhabditis elegans] ref|NP_499049.2| Serpentine Receptor, class X family member (srx-45) [Caenorhabditis elegans] sp|P34490|SRX45_CAEEL Serpentine receptor class X 45 (Srx-45 protein) 1.0E-115
blast CAE65249 Hypothetical protein CBG10133 [Caenorhabditis briggsae] 1.0E-100
blast AAP86615 Serpentine receptor, class x protein 50, isoform b [Caenorhabditis elegans] ref|NP_001023464.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 3.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499049.2 7 18-40,53-75,90-112,132-153,180-202,242-261,276-298
K01B6.2 7 18-40,53-75,90-112,132-153,180-202,242-261,276-298
SNAP00000010286 3 23-45,85-104,119-141
GENEFINDER00000010288 7 15-37,50-72,87-109,129-150,177-199,239-258,273-295
Sequence
Target Sequence 
>C. ELEGANS:186891_AT
gtcgagacgagatttgttcaacaagtcaccatgcaaggacttctttatgttattgaactt
gtcacatacttctacatttcccttcgattcccagtgccactggaacctgtagaattggca
aaatcatcaaatagatggccaaacttcttactcacaacttatgcttggattttggtacat
gctcttgacggagtaataacgttaatattcaacaaacaatttcgtagtgttcttcgtcat
ccttgccgctcacaagaggcattaaatatttcaaagactccgtcaagaagtctcgttggc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAGACGAGATTTGTTCAACAAG 102 475 79 Antisense
TGTTCAACAAGTCACCATGCAAGGA 440 559 93 Antisense
TGTCACATACTTCTACATTTCCCTT 483 559 138 Antisense
CTTCGATTCCCAGTGCCACTGGAAC 339 219 160 Antisense
AGTGCCACTGGAACCTGTAGAATTG 102 59 171 Antisense
TAGATGGCCAAACTTCTTACTCACA 476 653 210 Antisense
AACTTCTTACTCACAACTTATGCTT 540 139 220 Antisense
GGATTTTGGTACATGCTCTTGACGG 445 509 245 Antisense
AACAATTTCGTAGTGTTCTTCGTCA 37 135 293 Antisense
TCATCCTTGCCGCTCACAAGAGGCA 11 623 315 Antisense
ACTCCGTCAAGAAGTCTCGTTGGCG 183 97 355 Antisense
Sequence Source Affymetrix Proprietary Database