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[186889_at]

Description Y18D10A.16 /REP_DB=WormBase Gene ID /WP=CE21412 /TR=Q9XW18 /GB=CAA22316.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 53      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 74      6grp_total > 63      4grp_total > 40      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 530.6
(-3)
P 		648.9
(-1.2)
P 		933.4
(3)
P 		737
(0.1)
P 		403
B 537.9
(-3)
P 		587.1
(-1.8)
P 		776.8
(3)
P 		574.4
(-2.1)
P 		239
C 562.7
(-2.8)
P 		694.5
(-0.5)
P 		899.7
(3)
P 		551.8
(-3)
P 		348
avr 543.7
(-3) 		643.5
(-1.2) 		870
(3) 		621.1
(-1.6) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 476.3
(-3)
P 		673.6
(0.2)
P 		850.4
(3)
P 		693.4
(0.5)
P 		638.8
(-0.4)
P 		591
(-1.2)
P 		374
B 536.2
(-3)
P 		684.6
(-0.1)
P 		756.2
(1.3)
P 		576.1
(-2.2)
P 		717.8
(0.5)
P 		845
(3)
P 		309
C 517.8
(-3)
P 		735
(1.5)
P 		804.8
(3)
P 		704.7
(0.9)
P 		638.2
(-0.5)
P 		646.4
(-0.3)
P 		287
avr 510.1
(-3) 		697.7
(0.8) 		803.8
(3) 		658.1
(0) 		664.9
(0.2) 		694.1
(0.8) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 193.2
(0.8)
P 		140.8
(-1.5)
P 		244
(3)
P 		107.9
(-3)
P 		136
B 171.5
(2.1)
P 		145
(-0.6)
P 		180
(3)
P 		122.4
(-3)
P 		58
C 186.3
(-0.5)
P 		199.7
(-0.1)
P 		313.6
(3)
P 		93
(-3)
P 		221
avr 183.7
(0.3) 		161.8
(-0.7) 		245.9
(3) 		107.8
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 87.8
(-3)
P 		239.6
(3)
P 		185.2
(0.8)
P 		175.9
(0.5)
P 		192.8
(1.2)
P 		143.9
(-0.8)
P 		152
B 186.6
(-1.7)
P 		227.9
(-0.2)
P 		183.6
(-1.9)
P 		152.6
(-3)
P 		291.6
(2.1)
P 		315.1
(3)
P 		163
C 191.9
(0.6)
P 		224.3
(3)
P 		204.8
(1.6)
P 		141.7
(-3)
P 		206.5
(1.7)
P 		216.4
(2.4)
P 		83
avr 155.4
(-3) 		230.6
(3) 		191.2
(-0.1) 		156.7
(-2.9) 		230.3
(3) 		225.1
(2.6) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2219
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.16 NCBI
Target Description Y18D10A.16 /REP_DB=WormBase Gene ID /WP=CE21412 /TR=Q9XW18 /GB=CAA22316.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060852 NCBI Caenorhabditis elegans Y18D10A.16 (Y18D10A.16) mRNA, complete cds. 11/11 None
SNAP00000000424 ENSEMBL cdna:SNAP chromosome:CEL140:I:12911280:12911570:-1 11/11 None
GENEFINDER00000000440 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12911280:12911570:-1 11/11 None
Y18D10A.16 ENSEMBL cdna:known chromosome:CEL140:I:12911280:12912146:-1 gene:Y18D10A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12911210-12911501(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.16
Entrez Gene 173157 Entrez gene
SwissProt Q9XW18 EMBL-EBI
WormBase CE21412 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22316 Hypothetical protein Y18D10A.16 [Caenorhabditis elegans] ref|NP_493253.1| Y18D10A.16 [Caenorhabditis elegans] 3.0E-50
blast CAE63509 Hypothetical protein CBG07988 [Caenorhabditis briggsae] 1.0E-45
blast EAA00792 ENSANGP00000020123 [Anopheles gambiae str. PEST] ref|XP_320694.2| ENSANGP00000020123 [Anopheles gambiae str. PEST] 9.0E-12
Sequence
Target Sequence 
>C. ELEGANS:186889_AT
acactcccaatcccaacaatttgaagaagacgaattcaacgagataaagaagaccggtgt
atcgtgtgatcgtctacgtcaagcactcaaaaaatgcatcaaaaactcgcattgtgtgca
agttcaagctcgatctgcgaaggaatgcatcgatgcacgtggcgacggaagtgtacccga
caaatgtttcgccgttctccaaaatttcaccgactgcaagcgatcactggtggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTCCCAATCCCAACAATTTGAA 223 109 30 Antisense
GAAGACCGGTGTATCGTGTGATCGT 343 339 78 Antisense
GTGTGATCGTCTACGTCAAGCACTC 556 487 93 Antisense
GCATCAAAAACTCGCATTGTGTGCA 377 309 125 Antisense
GCATTGTGTGCAAGTTCAAGCTCGA 537 307 138 Antisense
GTTCAAGCTCGATCTGCGAAGGAAT 50 445 151 Antisense
ATGCATCGATGCACGTGGCGACGGA 562 41 174 Antisense
GTGGCGACGGAAGTGTACCCGACAA 359 487 188 Antisense
TACCCGACAAATGTTTCGCCGTTCT 218 571 203 Antisense
CTCCAAAATTTCACCGACTGCAAGC 656 233 226 Antisense
GACTGCAAGCGATCACTGGTGGACA 434 375 241 Antisense
Sequence Source Affymetrix Proprietary Database