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[186887_at]

Description Y51H7BR.5 /REP_DB=WormBase Gene ID /WP=CE25374 /TR=Q9N3K0 /GB=AAF60748.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 18.6
(-3)
A 		26.1
(-1.9)
A 		27.6
(-1.7)
A 		59.6
(3)
M 		41
B 55.1
(2.3)
P 		18.4
(-3)
A 		26.1
(-1.9)
A 		59.7
(3)
P 		41
C 14
(-3)
A 		28
(-2)
A 		15.9
(-2.9)
A 		97.5
(3)
P 		84
avr 29.2
(-2.3) 		24.2
(-2.9) 		23.2
(-3) 		72.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 3.9
(-2.9)
A 		18.8
(-1)
A 		4.1
(-2.9)
A 		3
(-3)
A 		51.4
(3)
A 		18.9
(-1)
A 		48
B 29.1
(1.3)
A 		34.3
(2.5)
P 		9.6
(-3)
A 		36.6
(3)
A 		21.2
(-0.4)
A 		21.7
(-0.3)
A 		27
C 14.2
(-1.2)
A 		35.8
(3)
P 		25.4
(1)
A 		5.3
(-3)
A 		27.4
(1.3)
A 		23.6
(0.6)
A 		31
avr 15.7
(-2.2) 		29.6
(1.9) 		13
(-3) 		15
(-2.4) 		33.3
(3) 		21.4
(-0.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.8
(-0.8)
A 		5.7
(-3)
A 		7.2
(0)
A 		8.7
(3)
M 		3
B 17.6
(3)
P 		4.5
(-3)
A 		6
(-2.3)
A 		12.7
(0.8)
P 		13
C 4.6
(-3)
A 		8
(-1.3)
A 		5.5
(-2.5)
A 		16.4
(3)
P 		12
avr 9.7
(0.3) 		6.1
(-3) 		6.2
(-2.9) 		12.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.7
(-3)
A 		6.7
(-0.6)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		15.5
(3)
A 		4.6
(-1.4)
A 		15
B 10.1
(2.1)
A 		11.4
(3)
P 		2.3
(-3)
A 		9.7
(1.9)
A 		8.6
(1.2)
A 		8.1
(0.8)
A 		9
C 5.3
(-0.4)
A 		10.9
(3)
P 		6.5
(0.3)
A 		1.1
(-3)
A 		8.9
(1.8)
A 		7.9
(1.2)
A 		10
avr 5.4
(-1.3) 		9.7
(2) 		3.2
(-3) 		3.9
(-2.5) 		11
(3) 		6.9
(-0.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5077
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.5 NCBI
Target Description Y51H7BR.5 /REP_DB=WormBase Gene ID /WP=CE25374 /TR=Q9N3K0 /GB=AAF60748.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061585 NCBI Caenorhabditis elegans Y51H7BR.5 (Y51H7BR.5) mRNA, complete cds. 11/11 None
Y51H7BR.5 ENSEMBL cdna:known chromosome:CEL140:II:1529365:1530050:1 gene:Y51H7BR.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028995 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1529363-1530049(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7BR.5
Entrez Gene 190170 Entrez gene
SwissProt Q9N3K0 EMBL-EBI
WormBase CE25374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60748 Hypothetical protein Y51H7BR.5 [Caenorhabditis elegans] ref|NP_493986.1| Y51H7BR.5 [Caenorhabditis elegans] 5.0E-58
Sequence
Target Sequence 
>C. ELEGANS:186887_AT
gccgacccgaaacgtttcaatgaagcttctgacccccggagacacaactggcggtagtga
acttttgacatatgttccttataggaaaggtctaatattttgttcaaaaacactacaaaa
atcggaaaaaaattggacaaaaaccggaaatttttttggatttttttggacttttgaatt
tttaaaagattttttcactaaatttttcgaaataaagttccaaatgttttctccaaaatt
taaacttgaaaatttagctaagctaacttttacatttcccaattttaaaatattctcaat
gcatctttcaaacttcccaaattctctcaccaaaaacccaccaaatcctcttaaaaagtg
ctccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGACCCGAAACGTTTCAATGAAG 336 277 21 Antisense
CGTTTCAATGAAGCTTCTGACCCCC 468 247 33 Antisense
CCCCCGGAGACACAACTGGCGGTAG 409 259 53 Antisense
ACTGGCGGTAGTGAACTTTTGACAT 390 97 67 Antisense
AACTTTTGACATATGTTCCTTATAG 448 137 80 Antisense
TAGGAAAGGTCTAATATTTTGTTCA 647 651 102 Antisense
TAAGCTAACTTTTACATTTCCCAAT 24 639 279 Antisense
TAAAATATTCTCAATGCATCTTTCA 447 639 306 Antisense
AATGCATCTTTCAAACTTCCCAAAT 143 165 318 Antisense
TTTCAAACTTCCCAAATTCTCTCAC 400 673 326 Antisense
CAAATCCTCTTAAAAAGTGCTCCGA 273 191 362 Antisense
Sequence Source Affymetrix Proprietary Database