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[186886_s_at]

Description Y18D10A.23 /REP_DB=WormBase Gene ID /WP=CE21420 /TR=Q9XW19 /GB=CAA22315.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_high_8_8 > 22      6grp_highest_nonorm > 93      6grp_total > 95      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 97
(-3)
P 		191.4
(-1.3)
P 		187.4
(-1.4)
P 		436.9
(3)
P 		340
B 136.2
(-3)
P 		157.4
(-2.5)
P 		197.8
(-1.6)
P 		406.1
(3)
P 		270
C 105.6
(-3)
M 		193.3
(-1)
P 		180.5
(-1.3)
P 		365.1
(3)
P 		260
avr 112.9
(-3) 		180.7
(-1.6) 		188.6
(-1.4) 		402.7
(3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 116.8
(-3)
P 		121.5
(-3)
P 		147.5
(-2.7)
P 		313.3
(-0.9)
P 		681.8
(3)
P 		572.9
(1.8)
P 		565
B 111.4
(-2.9)
P 		118
(-2.9)
P 		103.1
(-3)
P 		328.5
(-1)
P 		768.5
(3)
P 		530.5
(0.9)
P 		665
C 110.8
(-3)
P 		182.6
(-2.2)
P 		152.9
(-2.6)
P 		318.9
(-0.8)
P 		673.6
(3)
P 		504.9
(1.2)
P 		563
avr 113
(-3) 		140.7
(-2.7) 		134.5
(-2.8) 		320.2
(-0.9) 		708
(3) 		536.1
(1.3) 		595
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 35.3
(-3)
P 		41.6
(-1.7)
P 		49
(-0.1)
P 		64
(3)
P 		29
B 43.4
(-2.4)
P 		38.9
(-3)
P 		45.8
(-2.1)
P 		86.5
(3)
P 		48
C 35
(-3)
M 		55.6
(1.4)
P 		62.9
(3)
P 		61.6
(2.7)
P 		28
avr 37.9
(-3) 		45.4
(-1.6) 		52.6
(-0.3) 		70.7
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 21.5
(-3)
P 		43.2
(-2.3)
P 		32.1
(-2.7)
P 		79.5
(-1.1)
P 		205.7
(3)
P 		139.5
(0.8)
P 		184
B 38.8
(-2.7)
P 		39.3
(-2.7)
P 		25
(-3)
P 		87
(-1.7)
P 		312.2
(3)
P 		197.8
(0.6)
P 		287
C 41.1
(-2.9)
P 		55.7
(-2.4)
P 		38.9
(-3)
P 		64.1
(-2.2)
P 		218
(3)
P 		169
(1.4)
P 		179
avr 33.8
(-2.9) 		46.1
(-2.6) 		32
(-3) 		76.9
(-1.7) 		245.3
(3) 		168.8
(0.8) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186886_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1794
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.23 NCBI
Target Description Y18D10A.23 /REP_DB=WormBase Gene ID /WP=CE21420 /TR=Q9XW19 /GB=CAA22315.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060850 NCBI Caenorhabditis elegans Y18D10A.23 (Y18D10A.23) mRNA, complete cds. 11/11 None
SNAP00000000420 ENSEMBL cdna:SNAP chromosome:CEL140:I:12875216:12877677:-1 11/11 None
GENEFINDER00000000447 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12875216:12877677:-1 11/11 None
Y18D10A.23 ENSEMBL cdna:known chromosome:CEL140:I:12875191:12877677:-1 gene:Y18D10A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12875146-12877608(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.23
Entrez Gene 173155 Entrez gene
SwissProt Q9XW19 EMBL-EBI
WormBase CE21420 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6865 amino acid transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5279 amino acid-polyamine transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22315 Hypothetical protein Y18D10A.23 [Caenorhabditis elegans] ref|NP_493251.1| Y18D10A.23 [Caenorhabditis elegans] 0.0
blast CAE63513 Hypothetical protein CBG07992 [Caenorhabditis briggsae] 0.0
blast AAA50724 Hypothetical protein R02F2.8 [Caenorhabditis elegans] ref|NP_498173.1| R02F2.8 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 6.2E-73
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493251.1 11 41-63,68-90,127-149,159-181,188-210,230-252,265-287,302-324,345-364,369-391,432-454
Y18D10A.23 11 41-63,68-90,127-149,159-181,188-210,230-252,265-287,302-324,345-364,369-391,432-454
SNAP00000000420 11 41-63,68-90,127-149,159-181,188-210,230-252,265-287,302-324,345-364,369-391,432-454
GENEFINDER00000000447 11 41-63,68-90,127-149,159-181,188-210,230-252,265-287,302-324,345-364,369-391,432-454
Sequence
Target Sequence 
>C. ELEGANS:186886_S_AT
atcccgtctatccagctaacttgggtcgctcagaccattaatatcctaatcactgctcat
atcttgcctactatcattattgtgctatcaccattatctcaacaagtggaggagtggatc
aagattccaaatcaattcggatgccgccgcgtccttgtccgcaccttcatcctcttcctc
gtcatgttcaccgcactctctgtccttaagctcggcctcttcctggatctagtcggtgcc
accaccatcaccctcatgactatgcttctaccgagcatcttctggctctttatgcaagct
tctgccaagaaacgtgaagacggtctgaaagcaggcaccatccaacagaatagtcccgat
gtggagactgccacgctggctgacgtttggtactacacgccaaagttgttgctggcattc
aattgcatttctctgacattcggcttattaggaggcctaacatctgccttctcggccatt
gaagcactcatcatctcagagcaggttgctccatgctacgtgaattggttcagagacggg
ttcaagagcacgagggagggtggatcgttgcattgttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCGTCTATCCAGCTAACTTGGG 495 37 898 Antisense
GTCGCTCAGACCATTAATATCCTAA 471 475 922 Antisense
TAATCACTGCTCATATCTTGCCTAC 460 635 944 Antisense
GTGCTATCACCATTATCTCAACAAG 94 481 979 Antisense
GACTATGCTTCTACCGAGCATCTTC 85 373 1155 Antisense
GGCTCTTTATGCAAGCTTCTGCCAA 468 539 1181 Antisense
GACGGTCTGAAAGCAGGCACCATCC 219 375 1216 Antisense
GGCACCATCCAACAGAATAGTCCCG 41 535 1231 Antisense
AGTCCCGATGTGGAGACTGCCACGC 150 61 1249 Antisense
CAGGTTGCTCCATGCTACGTGAATT 20 209 1399 Antisense
GAGGGTGGATCGTTGCATTGTTGCG 115 403 1453 Antisense
Sequence Source Affymetrix Proprietary Database