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[186884_s_at]

Description VW02B12L.4 /REP_DB=WormBase Gene ID /WP=CE26728 /TR=Q23129 /GB=CAA91404.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 5.8
(-3)
A 		16.5
(-2.2)
A 		49.9
(0.2)
A 		88.8
(3)
A 		83
B 6.9
(-3)
A 		83.9
(0.3)
A 		28.1
(-2.1)
A 		145.8
(3)
A 		139
C 8.3
(-3)
A 		70.8
(3)
A 		65.3
(2.5)
A 		52.7
(1.3)
A 		63
avr 7
(-3) 		57.1
(0.4) 		47.8
(-0.2) 		95.8
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 25.6
(-2)
A 		51.7
(0.2)
A 		13
(-3)
A 		86
(3)
A 		57.6
(0.7)
A 		54.3
(0.4)
A 		73
B 8.2
(-3)
A 		27.1
(-1.9)
A 		65.5
(0.4)
A 		33.6
(-1.5)
A 		14.8
(-2.6)
A 		108.7
(3)
A 		101
C 7.7
(-3)
A 		46.7
(1.3)
A 		10.6
(-2.7)
A 		16.1
(-2.1)
A 		12.9
(-2.4)
A 		61.8
(3)
A 		54
avr 13.8
(-3) 		41.8
(-0.3) 		29.7
(-1.4) 		45.2
(0.1) 		28.4
(-1.6) 		74.9
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 2.1
(-3)
A 		3.6
(-2.2)
A 		13
(3)
A 		13
(3)
A 		11
B 2.2
(-3)
A 		20.7
(0.8)
A 		6.5
(-2.1)
A 		31.1
(3)
A 		29
C 2.7
(-3)
A 		20.4
(2.3)
A 		22.8
(3)
A 		8.9
(-1.1)
A 		20
avr 2.3
(-3) 		14.9
(1.9) 		14.1
(1.6) 		17.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4.7
(-2.4)
A 		18.4
(1.9)
A 		2.8
(-3)
A 		21.8
(3)
A 		17.4
(1.6)
A 		13.2
(0.3)
A 		19
B 2.9
(-3)
A 		9
(-2)
A 		15.9
(-0.9)
A 		8.9
(-2)
A 		6
(-2.5)
A 		40.5
(3)
A 		38
C 2.9
(-2.9)
A 		14.2
(0.8)
A 		2.7
(-3)
A 		3.2
(-2.8)
A 		4.2
(-2.5)
A 		20.7
(3)
A 		18
avr 3.5
(-3) 		13.9
(-0.1) 		7.1
(-2) 		11.3
(-0.8) 		9.2
(-1.4) 		24.8
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186884_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3047
Sequence Type Exemplar sequence
Representative Public ID VW02B12L.4 NCBI
Target Description VW02B12L.4 /REP_DB=WormBase Gene ID /WP=CE26728 /TR=Q23129 /GB=CAA91404.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064038
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002925 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11445214:11448722:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002903 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11444071-11446784(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:186884_S_AT
aagtcttccatatgatccatttccatatggattagatgatcgtccagatcctttttcgag
taatgctggattaacacaccatgaacactctcaaaaacggagtcatcgccaccgtcatct
tccacacgattacggtgagcacaatgcgtggggattcgagaagcaggcagaaggcgagga
aaaacgagaagagccgaaagaaacaagtcagcaacaaatggaacgaatcgcctcacaacc
gagaactgctccgagactgccaacgagtacagtggatccggcggaagatctgaaatcggc
gattcgggatgctcaactgggaatcactacgacagatttgccaccagattcaaggcataa
tggtttattgaaggatattgggtcaattggagtcggattcggtgtcggcgttggtgttcc
tggcaacgacccggtctcagttggaactggagtatctgtaggccttgacggatcgggtcc
agcaggtggactacctccattcgctgaagcaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCTTCCATATGATCCATTTCCA 679 155 651 Antisense
GATCGTCCAGATCCTTTTTCGAGTA 671 417 688 Antisense
CGTCATCTTCCACACGATTACGGTG 287 247 763 Antisense
CTCACAACCGAGAACTGCTCCGAGA 485 227 882 Antisense
TGCTCCGAGACTGCCAACGAGTACA 634 579 897 Antisense
TCACTACGACAGATTTGCCACCAGA 271 627 974 Antisense
GCGTTGGTGTTCCTGGCAACGACCC 491 289 1058 Antisense
GCAACGACCCGGTCTCAGTTGGAAC 621 315 1073 Antisense
TGGAGTATCTGTAGGCCTTGACGGA 86 547 1098 Antisense
CCTTGACGGATCGGGTCCAGCAGGT 3 271 1113 Antisense
CTACCTCCATTCGCTGAAGCAATCT 467 225 1141 Antisense
Sequence Source Affymetrix Proprietary Database