[Home] | [Total List]

[186883_s_at]

Description Y32H12A.7 /REP_DB=WormBase Gene ID /WP=CE24201 /TR=Q9N534 /GB=AAF60490.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 72      6grp_total > 85      4grp_total > 23      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 357.5
(3)
P 		231.7
(-3)
P 		308
(0.6)
P 		325.2
(1.5)
P 		126
B 424.3
(3)
P 		187.8
(-3)
P 		240
(-1.7)
P 		337
(0.8)
P 		237
C 481.9
(3)
P 		236.7
(-3)
P 		289
(-1.7)
P 		345
(-0.3)
P 		245
avr 421.2
(3) 		218.7
(-3) 		279
(-1.2) 		335.7
(0.5) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 443.5
(-0.3)
P 		342.4
(-3)
P 		401.7
(-1.4)
P 		418.5
(-0.9)
P 		514
(1.6)
P 		564.1
(3)
P 		222
B 360.2
(-1.8)
P 		318.6
(-3)
P 		343.5
(-2.3)
P 		519.2
(3)
P 		400
(-0.6)
P 		497
(2.3)
P 		201
C 329.6
(-3)
P 		495.3
(3)
P 		376.8
(-1.3)
P 		465.5
(1.9)
P 		340.3
(-2.6)
P 		458.6
(1.7)
P 		166
avr 377.8
(-2.8) 		385.4
(-2.5) 		374
(-3) 		467.7
(1.2) 		418.1
(-1) 		506.6
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 130.2
(3)
P 		50.3
(-2.8)
P 		80.5
(-0.6)
P 		47.6
(-3)
P 		83
B 135.3
(3)
P 		46.4
(-3)
P 		55.6
(-2.4)
P 		71.8
(-1.3)
P 		89
C 159.5
(3)
P 		68
(-2.4)
P 		100.7
(-0.5)
P 		58.2
(-3)
P 		101
avr 141.7
(3) 		54.9
(-3) 		78.9
(-1.3) 		59.2
(-2.7) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 81.8
(-3)
P 		121.8
(0.3)
P 		87.5
(-2.5)
P 		106.1
(-1)
P 		155.1
(3)
P 		137.3
(1.5)
P 		73
B 125.3
(-0.5)
P 		106
(-1.7)
P 		83.4
(-3)
P 		137.5
(0.2)
P 		162.5
(1.7)
P 		185.3
(3)
P 		102
C 122.2
(-0.1)
P 		151.1
(2.8)
P 		95.9
(-2.8)
P 		93.6
(-3)
P 		110.1
(-1.3)
P 		153.5
(3)
P 		60
avr 109.8
(-1.2) 		126.3
(0.2) 		88.9
(-3) 		112.4
(-1) 		142.6
(1.6) 		158.7
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186883_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6037
Sequence Type Exemplar sequence
Representative Public ID Y32H12A.7 NCBI
Target Description Y32H12A.7 /REP_DB=WormBase Gene ID /WP=CE24201 /TR=Q9N534 /GB=AAF60490.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065749 NCBI Caenorhabditis elegans Y32H12A.7 (Y32H12A.7) mRNA, complete cds. 11/11 None
Y32H12A.7.1 ENSEMBL cdna:known chromosome:CEL140:III:5382226:5385363:-1 gene:Y32H12A.7 11/11 None
Y32H12A.7.2 ENSEMBL cdna:known chromosome:CEL140:III:5382255:5385363:-1 gene:Y32H12A.7 11/11 None
Y32H12A.7.3 ENSEMBL cdna:known chromosome:CEL140:III:5382301:5385371:-1 gene:Y32H12A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5382389-5385358(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32H12A.7
Entrez Gene 175741 Entrez gene
SwissProt Q9N534 EMBL-EBI
WormBase CE24201 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261818_AT ABC1 family protein at
CANINE_2:CFAAFFX.6840.1.S1_AT similar to aarF domain containing kinase 2 cfa
HG-U133_PLUS_2:222117_S_AT aarF domain containing kinase 2 hs
HG-U133A_2:222117_S_AT aarF domain containing kinase 2 hs
HG-U133A:222117_S_AT aarF domain containing kinase 2 hs
HU35KSUBB:RC_Z39191_AT aarF domain containing kinase 2 hs
HU35KSUBB:RC_T23736_AT aarF domain containing kinase 2 hs
U133_X3P:HS.27262.2.S1_3P_AT aarF domain containing kinase 2 hs
U133_X3P:HS.27262.2.S1_3P_A_AT aarF domain containing kinase 2 hs
U133_X3P:HS.27262.1.S1_3P_S_AT aarF domain containing kinase 2 hs
U133_X3P:4870808C_3P_X_AT aarF domain containing kinase 2 hs
U133_X3P:222117_3P_S_AT aarF domain containing kinase 2 hs
U133_X3P:221893_3P_S_AT aarF domain containing kinase 2 hs
HG-U133A_2:221893_S_AT aarF domain containing kinase 2 hs
HG-U133_PLUS_2:221893_S_AT aarF domain containing kinase 2 hs
HG-U133A:221893_S_AT aarF domain containing kinase 2 hs
HG-U133A_2:221894_AT aarF domain containing kinase 2 hs
HG-U133_PLUS_2:221894_AT aarF domain containing kinase 2 hs
HG-U133A:221894_AT aarF domain containing kinase 2 hs
HG-U133A_2:44120_AT aarF domain containing kinase 2 hs
HG-U133_PLUS_2:44120_AT aarF domain containing kinase 2 hs
HG-U133A:44120_AT aarF domain containing kinase 2 hs
HG-U95B:44120_AT aarF domain containing kinase 2 hs
HG-U95B:57897_AT aarF domain containing kinase 2 hs
HG-U95B:57900_G_AT aarF domain containing kinase 2 hs
MG-U74BV2:114653_AT aarF domain containing kinase 2 mm
MG-U74BV2:109306_AT aarF domain containing kinase 2 mm
MOE430B:1433637_AT aarF domain containing kinase 2 mm
MOUSE430_2:1433637_AT aarF domain containing kinase 2 mm
MOE430B:1447859_AT aarF domain containing kinase 2 mm
MOUSE430_2:1447859_AT aarF domain containing kinase 2 mm
MU19KSUBC:TC37222_AT AarF domain containing kinase 2, mRNA (cDNA clone MGC:78248 IMAGE:30446117) mm
RG-U34C:RC_AI072314_AT aarF domain containing kinase 2 (predicted) rn
RAE230A:1376720_AT aarF domain containing kinase 2 (predicted) rn
RAT230_2:1376720_AT aarF domain containing kinase 2 (predicted) rn
RAE230B:1396968_AT AarF domain containing kinase 2 (predicted) rn
RAT230_2:1396968_AT AarF domain containing kinase 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60490 Hypothetical protein Y32H12A.7 [Caenorhabditis elegans] ref|NP_498150.1| Y32H12A.7 [Caenorhabditis elegans] 0.0
blast CAE61331 Hypothetical protein CBG05169 [Caenorhabditis briggsae] 0.0
blast CAF94515 unnamed protein product [Tetraodon nigroviridis] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR004147 EMBL-EBI ABC1 protein 2.3E-12
Sequence
Target Sequence 
>C. ELEGANS:186883_S_AT
gagggctggaatggtttcgttcactggtaaacttgcgttcagctccaagaattcgtttca
ccgactctccggatcttgaagatgagcctactctggtccttctagacactggaattgcca
tttccgaaacaccgaaaaatttgcacaatttgaaatcgcttttcagaagtgttgtggaga
aacggggatacgatgtcgggaagcttcttcttcatcaatcccccttccaacagtgcaatg
atccggaaaggttttgccgacaagtggaaaagcttgtgttgaaggccagaagcgaaaaga
gcttgagaactctcaatatctcggcacttctctcagaaatgttcacaattgtggcggagc
acaaagtggagctcgactcggctttcactacagtaatcctgtctgtaatggttctcgaag
gattcggccgatctctggatccggatcttgatctcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGCTGGAATGGTTTCGTTCACT 424 401 1319 Antisense
CAGCTCCAAGAATTCGTTTCACCGA 565 203 1358 Antisense
TCACCGACTCTCCGGATCTTGAAGA 195 627 1376 Antisense
GAAGATGAGCCTACTCTGGTCCTTC 479 337 1396 Antisense
GATACGATGTCGGGAAGCTTCTTCT 158 425 1505 Antisense
CCCCTTCCAACAGTGCAATGATCCG 327 261 1539 Antisense
ATCTCGGCACTTCTCTCAGAAATGT 360 33 1636 Antisense
CGACTCGGCTTTCACTACAGTAATC 418 205 1692 Antisense
AATCCTGTCTGTAATGGTTCTCGAA 35 169 1713 Antisense
CTCGAAGGATTCGGCCGATCTCTGG 252 231 1732 Antisense
TGGATCCGGATCTTGATCTCTTCCA 221 551 1754 Antisense
Sequence Source Affymetrix Proprietary Database