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[186882_at]

Description K01B6.3 /REP_DB=WormBase Gene ID /WP=CE27190 /TR=SW:P34491 /GB=CAA80130.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 59      6grp_total > 31      4grp_total > 60      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 201.3
(3)
P 		182.3
(2)
P 		131.8
(-0.5)
P 		81.4
(-3)
P 		120
B 139.5
(-0.1)
P 		163.6
(1)
P 		207.4
(3)
P 		76.2
(-3)
A 		131
C 177.8
(3)
P 		140.1
(0.5)
P 		174.9
(2.8)
P 		86.9
(-3)
P 		91
avr 172.9
(3) 		162
(2.3) 		171.4
(2.9) 		81.5
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 106.4
(-0.6)
P 		230.3
(3)
P 		192.1
(1.9)
P 		200.6
(2.1)
P 		124
(-0.1)
P 		23.8
(-3)
A 		207
B 153.8
(0)
P 		200.3
(2.2)
P 		217.1
(3)
P 		183
(1.4)
P 		173.3
(0.9)
P 		89.1
(-3)
P 		128
C 145.9
(0.5)
P 		189.3
(2.2)
P 		181.4
(1.9)
P 		200.2
(2.6)
P 		209.5
(3)
P 		54.9
(-3)
P 		155
avr 135.4
(0.2) 		206.6
(3) 		196.9
(2.6) 		194.6
(2.5) 		168.9
(1.5) 		55.9
(-3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 73.3
(3)
P 		39.6
(-0.3)
P 		34.4
(-0.8)
P 		11.9
(-3)
P 		61
B 44.5
(2.3)
P 		40.4
(1.6)
P 		48
(3)
P 		16.2
(-3)
A 		32
C 58.9
(2.7)
P 		40.3
(0.3)
P 		61
(3)
P 		14.6
(-3)
P 		46
avr 58.9
(3) 		40.1
(0.5) 		47.8
(1.5) 		14.2
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 19.6
(-1.9)
P 		81.9
(3)
P 		41.8
(-0.2)
P 		50.9
(0.6)
P 		37.4
(-0.5)
P 		5.8
(-3)
A 		76
B 53.5
(0.3)
P 		66.7
(2.4)
P 		52.7
(0.1)
P 		48.5
(-0.5)
P 		70.4
(3)
P 		33.2
(-3)
P 		37
C 54.1
(1.3)
P 		57.8
(1.8)
P 		46.2
(0.4)
P 		40.3
(-0.3)
P 		67.8
(3)
P 		18.4
(-3)
P 		49
avr 42.4
(-0.2) 		68.8
(3) 		46.9
(0.4) 		46.6
(0.3) 		58.5
(1.8) 		19.1
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6327
Sequence Type Exemplar sequence
Representative Public ID K01B6.3 NCBI
Target Description K01B6.3 /REP_DB=WormBase Gene ID /WP=CE27190 /TR=SW:P34491 /GB=CAA80130.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066647 NCBI Caenorhabditis elegans K01B6.3 (K01B6.3) mRNA, complete cds. 11/11 None
SNAP00000010285 ENSEMBL cdna:SNAP chromosome:CEL140:III:9302116:9303612:1 11/11 None
GENEFINDER00000010289 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9302116:9303612:1 11/11 None
K01B6.3.2 ENSEMBL cdna:known chromosome:CEL140:III:9300118:9303758:1 gene:K01B6.3 11/11 None
K01B6.3.1 ENSEMBL cdna:known chromosome:CEL140:III:9300121:9303758:1 gene:K01B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9301831-9303918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01B6.3
Entrez Gene 176309 Entrez gene
SwissProt P34491 EMBL-EBI
WormBase CE27190 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80130 Hypothetical protein K01B6.3 [Caenorhabditis elegans] ref|NP_499048.1| K01B6.3 [Caenorhabditis elegans] sp|P34491|YMM3_CAEEL Hypothetical protein K01B6.3 in chromosome III 0.0
blast CAE65250 Hypothetical protein CBG10134 [Caenorhabditis briggsae] 0.0
blast CAE65250 Hypothetical protein CBG10134 [Caenorhabditis briggsae] 1.0E-180
blast CAA80130 Hypothetical protein K01B6.3 [Caenorhabditis elegans] ref|NP_499048.1| K01B6.3 [Caenorhabditis elegans] sp|P34491|YMM3_CAEEL Hypothetical protein K01B6.3 in chromosome III 1.0E-164
blast CAE65250 Hypothetical protein CBG10134 [Caenorhabditis briggsae] 1.0E-152
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499048.1 4 83-105,120-142,154-176,191-213
K01B6.3.2 4 83-105,120-142,154-176,191-213
K01B6.3.1 4 83-105,120-142,154-176,191-213
SNAP00000010285 4 48-70,85-107,119-141,156-178
GENEFINDER00000010289 4 12-34,49-71,83-105,120-142
Sequence
Target Sequence 
>C. ELEGANS:186882_AT
atgtgggatgtcaggaagtttcgaaaatcgctgaacaattcaaaatggaggtacagaaaa
agagttcacttcacatattgttccattatgcaagaagattttaaaaatgaacgactacaa
aataaaacaaaaagcgtagagagtcgatttcgagatggacaagaagagattttaaagcag
attcagaggaagcagaatgtcacgaatatcagtattgcacctgatgaaccatttgatgaa
gcacagttgcctcaaaatgctcgatctatttcgacactatcaacaactccttcaaactca
gcaacggtgtcttctccacttggtaaaaggaagcaccatacagtatcagtatcatccaaa
aagatgagagacaatgaggggaagaaggttaaagtttcaagaagaaagccaggtggaatc
aaagttcagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGGATGTCAGGAAGTTTCGAA 497 37 460 Antisense
AAGAGTTCACTTCACATATTGTTCC 318 155 519 Antisense
AAAGCGTAGAGAGTCGATTTCGAGA 59 125 590 Antisense
AGTATTGCACCTGATGAACCATTTG 437 61 670 Antisense
CACAGTTGCCTCAAAATGCTCGATC 79 195 701 Antisense
ATGCTCGATCTATTTCGACACTATC 653 41 716 Antisense
TTTCGACACTATCAACAACTCCTTC 249 669 728 Antisense
CAAACTCAGCAACGGTGTCTTCTCC 17 193 752 Antisense
CGGTGTCTTCTCCACTTGGTAAAAG 144 245 764 Antisense
AAAGGAAGCACCATACAGTATCAGT 352 121 785 Antisense
GCCAGGTGGAATCAAAGTTCAGCTT 610 279 867 Antisense
Sequence Source Affymetrix Proprietary Database