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[186881_at]

Description Y18D10A.21 /REP_DB=WormBase Gene ID /WP=CE21419 /TR=Q9XW04 /GB=CAA22331.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 23      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 28.7
(2)
A 		3.7
(-3)
A 		5
(-2.7)
A 		33.6
(3)
A 		30
B 47.8
(3)
A 		10.3
(-2)
A 		3.4
(-2.9)
A 		2.8
(-3)
A 		45
C 21.4
(-0.7)
A 		10.7
(-3)
A 		15.1
(-2)
A 		38.2
(3)
A 		28
avr 32.6
(3) 		8.2
(-2.9) 		7.8
(-3) 		24.9
(1.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 12.7
(-1.4)
A 		7.1
(-2.8)
A 		22.7
(1)
A 		6.2
(-3)
A 		30.8
(3)
A 		24
(1.3)
A 		25
B 5.3
(-2.6)
A 		30.1
(0.4)
A 		2.4
(-3)
A 		20.8
(-0.7)
A 		47.9
(2.6)
A 		51
(3)
A 		49
C 6.1
(-3)
A 		40.1
(0.4)
A 		7.8
(-2.8)
A 		52.7
(1.6)
A 		24.9
(-1.1)
A 		66.6
(3)
A 		61
avr 8
(-3) 		25.8
(-0.3) 		11
(-2.5) 		26.6
(-0.2) 		34.5
(1.1) 		47.2
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.4
(3)
A 		0.8
(-3)
A 		1.3
(-2.7)
A 		4.9
(-0.4)
A 		10
B 15.3
(3)
A 		2.5
(-2.2)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		15
C 7.1
(3)
A 		3.1
(-3)
A 		5.3
(0.3)
A 		6.4
(2)
A 		4
avr 10.9
(3) 		2.1
(-3) 		2.5
(-2.7) 		4
(-1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.3
(-2.5)
A 		2.5
(-2.3)
A 		4.9
(-0.4)
A 		1.6
(-3)
A 		9.3
(3)
A 		5.8
(0.3)
A 		8
B 1.8
(-2.6)
A 		10
(0)
A 		0.6
(-3)
A 		5.5
(-1.4)
A 		19.4
(3)
A 		19
(2.9)
A 		19
C 2.2
(-2.9)
A 		12.2
(0)
A 		2
(-3)
A 		10.6
(-0.5)
A 		8
(-1.2)
A 		22.3
(3)
A 		20
avr 2.1
(-3) 		8.2
(-0.3) 		2.5
(-2.8) 		5.9
(-1.3) 		12.2
(1.5) 		15.7
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.540
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.21 NCBI
Target Description Y18D10A.21 /REP_DB=WormBase Gene ID /WP=CE21419 /TR=Q9XW04 /GB=CAA22331.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060858 NCBI Caenorhabditis elegans Y18D10A.21 (Y18D10A.21) mRNA, complete cds. 11/11 None
SNAP00000000434 ENSEMBL cdna:SNAP chromosome:CEL140:I:12937518:12939189:1 11/11 None
GENEFINDER00000000458 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12937518:12939184:1 11/11 None
Y18D10A.21 ENSEMBL cdna:known chromosome:CEL140:I:12937518:12939189:1 gene:Y18D10A.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12937448-12939120(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.21
Entrez Gene 189477 Entrez gene
SwissProt Q9XW04 EMBL-EBI
WormBase CE36229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22331 Hypothetical protein Y18D10A.21 [Caenorhabditis elegans] ref|NP_493259.2| Y18D10A.21 [Caenorhabditis elegans] 1.0E-159
blast CAA22331 Hypothetical protein Y18D10A.21 [Caenorhabditis elegans] ref|NP_493259.2| Y18D10A.21 [Caenorhabditis elegans] 1.0E-153
blast CAA22331 Hypothetical protein Y18D10A.21 [Caenorhabditis elegans] ref|NP_493259.2| Y18D10A.21 [Caenorhabditis elegans] 1.0E-152
blast CAB03106 Hypothetical protein F46A9.1 [Caenorhabditis elegans] ref|NP_492509.1| F46A9.1 [Caenorhabditis elegans] 9.0E-20
blast CAB03106 Hypothetical protein F46A9.1 [Caenorhabditis elegans] ref|NP_492509.1| F46A9.1 [Caenorhabditis elegans] 1.0E-19
blast CAB03107 Hypothetical protein F46A9.2 [Caenorhabditis elegans] ref|NP_492510.1| F46A9.2 [Caenorhabditis elegans] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186881_AT
gtcgccacaaatacggtgtcttcactcaattctatcatgtttttgagccaggacaaacga
tggatctcattattggaataagggcttctaaagatctctcattcacggaactggccttgg
aacacttgatgaatccattcggagtccttcaaatctcccattatcgttcatggaaaaaag
atgatagtgataaggaatggttcaataaaatcaatggtcgtgcgtgtattcacaagttgg
acagaaattactatggtcattgggaggtgaagcttgcggtggaacatgagactgatgaca
ttaaagatcgcaaaaaggtgtttgcagtcaaactgctcaaaacagtcgagaagaaagccg
atgagattcgtgagaagaagaagaaagcgtttccgctcatgttgaaagattatcaccctg
cacccaagtccgattatagcgggtattccgctatgacagtgtttgagggtgtgcccagtg
cgaagttggatgcgaacaatctcaaatcggtagagcagaagacggcggcggtgaaggagc
cagagcccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCACAAATACGGTGTCTTCAC 629 475 320 Antisense
GTGTCTTCACTCAATTCTATCATGT 344 487 335 Antisense
AAGATCTCTCATTCACGGAACTGGC 517 155 410 Antisense
GGAACTGGCCTTGGAACACTTGATG 525 529 426 Antisense
GAATCCATTCGGAGTCCTTCAAATC 261 331 450 Antisense
CTTCAAATCTCCCATTATCGTTCAT 642 221 466 Antisense
AAGCGTTTCCGCTCATGTTGAAAGA 608 143 704 Antisense
TTGAAAGATTATCACCCTGCACCCA 232 703 721 Antisense
CGGGTATTCCGCTATGACAGTGTTT 284 243 759 Antisense
GTGTTTGAGGGTGTGCCCAGTGCGA 451 483 778 Antisense
GGCGGTGAAGGAGCCAGAGCCCATT 78 541 846 Antisense
Sequence Source Affymetrix Proprietary Database