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[186880_at]

Description C25E10.10 /REP_DB=WormBase Gene ID /WP=CE06872 /TR=Q18159 /GB=AAA92315.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 80      6grp_total > 07      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 209.4
(3)
P 		108.4
(-3)
P 		151.6
(-0.4)
P 		153.2
(-0.3)
P 		101
B 179.3
(2.2)
P 		140.6
(-2.9)
P 		140.1
(-3)
P 		185.6
(3)
P 		46
C 295.2
(3)
P 		157.4
(-2)
P 		128.5
(-3)
P 		130.6
(-2.9)
P 		167
avr 228
(3) 		135.5
(-3) 		140.1
(-2.7) 		156.5
(-1.6) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 239.3
(3)
P 		179.2
(-0.7)
P 		214.6
(1.5)
P 		187.6
(-0.2)
P 		141.7
(-3)
P 		158.7
(-2)
P 		98
B 291.4
(3)
P 		213.4
(0.4)
P 		204
(0.1)
P 		155.4
(-1.6)
P 		167.1
(-1.2)
P 		112.1
(-3)
P 		179
C 289.5
(3)
P 		213.8
(0.1)
P 		145.4
(-2.4)
P 		199.1
(-0.4)
P 		130.7
(-3)
P 		184.8
(-1)
P 		159
avr 273.4
(3) 		202.1
(-0.4) 		188
(-1) 		180.7
(-1.4) 		146.5
(-3) 		151.9
(-2.7) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 76.3
(3)
P 		23.5
(-2.9)
P 		39.6
(-1.1)
P 		22.4
(-3)
P 		54
B 57.2
(3)
P 		34.7
(-2.5)
P 		32.5
(-3)
P 		39.6
(-1.3)
P 		25
C 97.7
(3)
P 		45.3
(-1.2)
P 		44.8
(-1.2)
P 		22
(-3)
P 		76
avr 77.1
(3) 		34.5
(-2.2) 		39
(-1.7) 		28
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 44.1
(-1.7)
P 		63.7
(3)
P 		46.7
(-1.1)
P 		47.6
(-0.9)
P 		42.8
(-2)
P 		38.7
(-3)
P 		25
B 101.4
(3)
P 		71
(-0)
P 		49.5
(-2.2)
P 		41.2
(-3)
P 		67.9
(-0.3)
P 		41.8
(-2.9)
P 		60
C 107.3
(3)
P 		65.2
(-0.6)
P 		37
(-3)
P 		40
(-2.7)
P 		42.3
(-2.5)
P 		61.9
(-0.9)
P 		70
avr 84.3
(3) 		66.6
(0.4) 		44.4
(-2.8) 		42.9
(-3) 		51
(-1.8) 		47.5
(-2.3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12121
Sequence Type Exemplar sequence
Representative Public ID C25E10.10 NCBI
Target Description C25E10.10 /REP_DB=WormBase Gene ID /WP=CE06872 /TR=Q18159 /GB=AAA92315.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072946 NCBI Caenorhabditis elegans C25E10.10 (C25E10.10) mRNA, complete cds. 11/11 None
SNAP00000038740 ENSEMBL cdna:SNAP chromosome:CEL140:V:9058063:9058733:-1 9/11 None
GENEFINDER00000038747 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9055949:9060919:-1 11/11 None
C25E10.10 ENSEMBL cdna:known chromosome:CEL140:V:9058063:9058905:-1 gene:C25E10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9058063-9058852(-) 99.61 99.61
Public Domain and Genome References
Gene Title
Ensembl C25E10.10
Entrez Gene 182894 Entrez gene
SwissProt Q18159 EMBL-EBI
WormBase CE06872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92315 Hypothetical protein C25E10.10 [Caenorhabditis elegans] ref|NP_505347.1| C25E10.10 [Caenorhabditis elegans] 1.0E-92
blast AAA92315 Hypothetical protein C25E10.10 [Caenorhabditis elegans] ref|NP_505347.1| C25E10.10 [Caenorhabditis elegans] 5.0E-87
blast AAA92315 Hypothetical protein C25E10.10 [Caenorhabditis elegans] ref|NP_505347.1| C25E10.10 [Caenorhabditis elegans] 8.0E-86
blast AAA92313 Hypothetical protein C25E10.8 [Caenorhabditis elegans] ref|NP_505345.1| C25E10.8 [Caenorhabditis elegans] 1.0E-73
blast AAA92314 Inhibitor of serine protease like protein protein 2, isoform a [Caenorhabditis elegans] ref|NP_505346.1| Inhibitor of Serine protease Like protein family member (isl-2) [Caenorhabditis elegans] 3.0E-62
blast CAE72087 Hypothetical protein CBG19175 [Caenorhabditis briggsae] 6.0E-61
blast CAE72087 Hypothetical protein CBG19175 [Caenorhabditis briggsae] 3.0E-57
blast CAE62644 Hypothetical protein CBG06778 [Caenorhabditis briggsae] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.4E-21
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.4E-21
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.4E-21
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.8E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.7E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.3E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038747 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:186880_AT
ttgctcttcttgcttttgctagatctggagttcttaaaaacacagaaaacatgcccattt
ctcacacagacgcactctgtggttctatcaaatgtcctgataattatagatgcgaactgc
cagtcagtgacttggaatgtggttctgaagacgattgttcagttgatccaaagtgcgtgc
caatcccaatccgcaaaccggaatgtgagggcgatgaagagctcaaggcgtgtggctcag
cgtgtgaaccgacatgtgataacgagaatccagaatgtgatttggtgtgtatgacaaacg
tctgccagtgtaagaaaggactcgtcagagactcggcaactggaaaatgtgtggagaaaa
ataaatgcagcaaatgcactcttgaatgctctgagaacgaaaaatgtgaacttgtggagc
tgacttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCTTCTTGCTTTTGCTAGATC 601 703 38 Antisense
AGAAAACATGCCCATTTCTCACACA 446 73 81 Antisense
CAGACGCACTCTGTGGTTCTATCAA 610 205 104 Antisense
GATGCGAACTGCCAGTCAGTGACTT 188 415 146 Antisense
GTTGATCCAAAGTGCGTGCCAATCC 685 437 199 Antisense
GAGCTCAAGGCGTGTGGCTCAGCGT 609 387 256 Antisense
GCTCAGCGTGTGAACCGACATGTGA 398 301 272 Antisense
GTATGACAAACGTCTGCCAGTGTAA 635 455 326 Antisense
ACTCGTCAGAGACTCGGCAACTGGA 286 97 357 Antisense
GCAAATGCACTCTTGAATGCTCTGA 703 317 407 Antisense
GTGAACTTGTGGAGCTGACTTGTGA 46 483 443 Antisense
Sequence Source Affymetrix Proprietary Database