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[186879_s_at]

Description C43E11.10 /REP_DB=WormBase Gene ID /WP=CE08688 /TR=P91155 /GB=AAB37629.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 20      4grp_high_8_8 > 23      6grp_highest_nonorm > 94      6grp_total > 76      4grp_total > 24      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 399.9
(-3)
P 		450.9
(-1.3)
P 		504.9
(0.5)
P 		579.6
(3)
P 		180
B 437.8
(-1.2)
P 		387.8
(-3)
P 		530.8
(2.1)
P 		554.9
(3)
P 		167
C 377.1
(-3)
P 		392.1
(-2.4)
P 		515.8
(2.4)
P 		532.1
(3)
P 		155
avr 404.9
(-3) 		410.3
(-2.8) 		517.2
(1.5) 		555.5
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 389.1
(-3)
P 		439.3
(-2.1)
P 		395.9
(-2.9)
P 		474.6
(-1.4)
P 		515.5
(-0.7)
P 		714.5
(3)
P 		325
B 385.8
(-3)
P 		403.6
(-2.7)
P 		461.6
(-1.8)
P 		504.7
(-1.2)
P 		505.3
(-1.2)
P 		779.4
(3)
P 		394
C 364.2
(-3)
P 		414.9
(-2.4)
P 		460.8
(-1.8)
P 		594.1
(-0.2)
P 		502.6
(-1.3)
P 		853.4
(3)
P 		489
avr 379.7
(-3) 		419.3
(-2.4) 		439.4
(-2.1) 		524.5
(-0.8) 		507.8
(-1.1) 		782.4
(3) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 145.6
(3)
P 		97.9
(-1.7)
P 		132
(1.7)
P 		84.8
(-3)
P 		61
B 139.6
(3)
P 		95.8
(-3)
P 		123
(0.7)
P 		118.3
(0.1)
P 		44
C 124.8
(-0.7)
P 		112.7
(-1.5)
P 		179.8
(3)
P 		89.7
(-3)
P 		90
avr 136.7
(2) 		102.1
(-2.4) 		144.9
(3) 		97.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 71.7
(-3)
P 		156.3
(2)
P 		86.2
(-2.1)
P 		120.4
(-0.1)
P 		155.6
(1.9)
P 		174
(3)
P 		102
B 134.2
(-2.3)
P 		134.3
(-2.3)
P 		112.1
(-3)
P 		133.7
(-2.3)
P 		205.3
(0.1)
P 		290.6
(3)
P 		179
C 135
(-2.4)
P 		126.6
(-2.7)
P 		117.3
(-3)
P 		119.5
(-2.9)
P 		162.6
(-1.4)
P 		285.7
(3)
P 		168
avr 113.6
(-2.7) 		139.1
(-1.6) 		105.2
(-3) 		124.5
(-2.2) 		174.5
(-0.1) 		250.1
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186879_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.656
Sequence Type Exemplar sequence
Representative Public ID C43E11.10 NCBI
Target Description C43E11.10 /REP_DB=WormBase Gene ID /WP=CE08688 /TR=P91155 /GB=AAB37629.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058942 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-6) (cdc-6) mRNA, complete cds. 11/11 None
SNAP00000031019 ENSEMBL cdna:SNAP chromosome:CEL140:I:4268268:4272097:-1 11/11 None
GENEFINDER00000031023 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4268268:4270288:-1 11/11 None
C43E11.10 ENSEMBL cdna:known chromosome:CEL140:I:4268098:4270288:-1 gene:C43E11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4268267-4270288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cdc-6
Ensembl C43E11.10
Entrez Gene 172029 Entrez gene
SwissProt P91155 EMBL-EBI
WormBase CE08688 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256040_AT cell division control protein CDC6b, putative (CDC6b) at
CANINE_2:CFA.1437.1.S1_AT similar to CDC6 homolog cfa
CANINE_2:CFA.1437.1.S1_S_AT similar to CDC6 homolog cfa
CANINE_2:CFAAFFX.24713.1.S1_AT similar to CDC6 homolog cfa
DROSOPHILA_2:1631019_AT dm
DROSGENOME1:154316_AT dm
HG-U95AV2:1536_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HC-G110:1536_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U133A_2:203968_S_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U133A:203968_S_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:203968_S_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-FOCUS:203968_S_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HUGENEFL:U77949_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U133A:203967_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:203967_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U133A_2:203967_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
U133_X3P:G4502702_3P_A_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
HG-U95AV2:36839_AT CDC6 cell division cycle 6 homolog (S. cerevisiae) hs
MU11KSUBB:MSA.33141.0_S_AT cell division cycle 6 homolog (S. cerevisiae) mm
MG-U74AV2:103821_AT cell division cycle 6 homolog (S. cerevisiae) mm
MOE430A:1417019_A_AT cell division cycle 6 homolog (S. cerevisiae) mm
MOUSE430A_2:1417019_A_AT cell division cycle 6 homolog (S. cerevisiae) mm
MOUSE430_2:1417019_A_AT cell division cycle 6 homolog (S. cerevisiae) mm
MU19KSUBA:TC16010_AT Cell division cycle 6 homolog (S. cerevisiae) (Cdc6), transcript variant 1, mRNA mm
MU19KSUBA:TC20121_AT Cell division cycle 6 homolog (S. cerevisiae) (Cdc6), transcript variant 1, mRNA mm
MU19KSUBB:TC31167_AT Cell division cycle 6 homolog (S. cerevisiae) (Cdc6), transcript variant 1, mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37629 Cell division cycle related protein 6 [Caenorhabditis elegans] ref|NP_491343.1| Cell Division Cycle related family member (cdc-6) [Caenorhabditis elegans] 0.0
blast CAE66818 Hypothetical protein CBG12183 [Caenorhabditis briggsae] 1.0E-148
blast EAA09435 ENSANGP00000015641 [Anopheles gambiae str. PEST] ref|XP_314072.2| ENSANGP00000015641 [Anopheles gambiae str. PEST] 8.0E-35
Sequence
Target Sequence 
>C. ELEGANS:186879_S_AT
gttaaccgctcgtaaagtggctgcaatgagcggagatcttcgtaccgcactccacatctt
caaacaacaaaaaagtcgtatgattcctgatgattcaaaagttcctggtaccccagttaa
tggatgtcgtgaagttcttggaatcatcaacaatgtctattcgtctccattggctcgtgc
tcgtcttccacttcaacctcgaattcttctagctgtctctttaacactttctgccaacaa
gaaatgcacattcgatcggaattccctgctccgtgcctattataaagcttgcgaggctct
tcgaatgcccgctcttgatgacgatgaacttcattcagcgttccagactctcgaatctca
atccttcgtccgtcagttaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAACCGCTCGTAAAGTGGCTGCA 82 255 1092 Antisense
GAGCGGAGATCTTCGTACCGCACTC 300 387 1119 Antisense
AACCTCGAATTCTTCTAGCTGTCTC 642 147 1286 Antisense
TGTCTCTTTAACACTTTCTGCCAAC 277 559 1305 Antisense
TGCACATTCGATCGGAATTCCCTGC 380 577 1336 Antisense
CCCTGCTCCGTGCCTATTATAAAGC 503 259 1355 Antisense
AAGCTTGCGAGGCTCTTCGAATGCC 324 149 1376 Antisense
AATGCCCGCTCTTGATGACGATGAA 320 165 1395 Antisense
GAACTTCATTCAGCGTTCCAGACTC 33 351 1417 Antisense
GACTCTCGAATCTCAATCCTTCGTC 702 373 1437 Antisense
TCAATCCTTCGTCCGTCAGTTAAAC 517 629 1449 Antisense
Sequence Source Affymetrix Proprietary Database