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[186878_at]

Description F26D11.11 /REP_DB=WormBase Gene ID /WP=CE17713 /TR=O61967 /GB=AAC17752.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 71      6grp_total > 35      4grp_total > 47      6grp_highest_sub > 02      6grp_cgc > 34      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 395.3
(3)
P 		183.1
(-2.4)
P 		181.8
(-2.4)
P 		158.6
(-3)
P 		237
B 389.6
(3)
P 		243.1
(-2.9)
P 		289.9
(-1)
P 		239.6
(-3)
P 		150
C 325.9
(3)
P 		216.5
(-3)
P 		227.8
(-2.4)
P 		247.5
(-1.3)
P 		109
avr 370.3
(3) 		214.2
(-3) 		233.2
(-2.3) 		215.2
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 298.7
(-0.5)
P 		369.2
(3)
P 		260.9
(-2.3)
P 		314.1
(0.3)
P 		247.1
(-3)
P 		306.6
(-0.1)
P 		122
B 388.6
(2)
P 		419
(3)
P 		390.8
(2.1)
P 		279.3
(-1.5)
P 		232.5
(-3)
P 		326.3
(0)
P 		187
C 390.8
(1.2)
P 		460.1
(3)
P 		316.8
(-0.8)
P 		293.1
(-1.4)
P 		232.6
(-3)
P 		280.5
(-1.7)
P 		228
avr 359.4
(1.1) 		416.1
(3) 		322.8
(-0.1) 		295.5
(-1) 		237.4
(-3) 		304.5
(-0.7) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 143.9
(3)
P 		39.7
(-2.2)
P 		47.5
(-1.8)
P 		23.2
(-3)
P 		121
B 124.3
(3)
P 		60
(-2.3)
P 		67.2
(-1.7)
P 		51.1
(-3)
P 		73
C 107.9
(3)
P 		62.2
(-1.1)
P 		79.4
(0.4)
P 		41.7
(-3)
P 		66
avr 125.4
(3) 		54
(-1.9) 		64.7
(-1.2) 		38.7
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 55.1
(-3)
P 		131.3
(3)
P 		56.8
(-2.9)
P 		79.7
(-1.1)
P 		74.6
(-1.5)
P 		74.6
(-1.5)
P 		76
B 135.2
(2.6)
P 		139.5
(3)
P 		94.9
(-1.1)
P 		74
(-3)
P 		94.5
(-1.1)
P 		121.7
(1.4)
P 		66
C 144.9
(3)
P 		140.4
(2.7)
P 		80.6
(-1.5)
P 		58.9
(-3)
P 		75.3
(-1.9)
P 		93.9
(-0.6)
P 		86
avr 111.7
(0.7) 		137.1
(3) 		77.4
(-2.4) 		70.9
(-3) 		81.5
(-2) 		96.7
(-0.7) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12384
Sequence Type Exemplar sequence
Representative Public ID F26D11.11 NCBI
Target Description F26D11.11 /REP_DB=WormBase Gene ID /WP=CE17713 /TR=O61967 /GB=AAC17752.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028679(11), NM_001028680(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028679 NCBI Caenorhabditis elegans LEThal family member (let-413) (let-413) mRNA, complete cds. 11/11 None
NM_001028680 NCBI Caenorhabditis elegans LEThal family member (let-413) (let-413) mRNA, complete cds. 9/11 None
SNAP00000012542 ENSEMBL cdna:SNAP chromosome:CEL140:V:7976040:7980219:-1 11/11 None
GENEFINDER00000012547 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7976040:7980219:-1 11/11 None
F26D11.11a ENSEMBL cdna:known chromosome:CEL140:V:7975515:7980365:-1 gene:F26D11.11 11/11 A 
F26D11.11b ENSEMBL cdna:known chromosome:CEL140:V:7975967:7980219:-1 gene:F26D11.11 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7976568-7980220(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26D11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17752 Lethal protein 413, isoform a [Caenorhabditis elegans] emb|CAB91651.1| LET-413 protein [Caenorhabditis elegans] ref|NP_001023850.1| LEThal family member (let-413) [Caenorhabditis elegans] 0.0
blast AAT81195 Lethal protein 413, isoform b [Caenorhabditis elegans] ref|NP_001023851.1| LEThal family member (let-413) [Caenorhabditis elegans] sp|O61967|LAP1_CAEEL Lap1 protein (Lethal protein 413) 0.0
blast CAE64020 Hypothetical protein CBG08615 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.2E-17
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.087
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 3.9E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0032
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.2
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.11
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 7.5E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.28
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0074
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0018
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 2.0E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.057
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.2E-17
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-15
Sequence
Target Sequence 
>C. ELEGANS:186878_AT
cggcataatacaccacatccaaagacaccaaagcataagaaaggatcaattgatggtcat
atgcttcctcatgaaattgatcaaccacggcaattatctttggtttcaaatcacagaaca
tcaacttcatcattcggagaatctagcaattcaattaatagagatttagctgatataagg
ttcattgacgctcctgcttcagctcaaaacggtgtccgtgaagcaacattgtcaccagaa
cgagaagaacgaatggcaacctccttgtcaagtttgtcaaatcttgccgcaggcactcaa
aacatgcacacaatcagaatccaaaaagacgacactggaaaattgggactttccttcgct
ggcggaacctcgaacgatccggcgccgaacagtaacggagattcaggactttttgtcacc
aaagtcacacctggaagtgctgcatacagatgtggtcttcgtgaaggagacaaattgatt
cgtgctaacgatgtgaacatgatcaacgcatctcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCATAATACACCACATCCAAAGA 682 241 1540 Antisense
ATTGATGGTCATATGCTTCCTCATG 338 5 1588 Antisense
ATAAGGTTCATTGACGCTCCTGCTT 323 25 1714 Antisense
TCCTGCTTCAGCTCAAAACGGTGTC 206 593 1731 Antisense
ACGGTGTCCGTGAAGCAACATTGTC 427 95 1748 Antisense
AAGAACGAATGGCAACCTCCTTGTC 237 151 1784 Antisense
AAGTTTGTCAAATCTTGCCGCAGGC 474 157 1809 Antisense
GCCGCAGGCACTCAAAACATGCACA 583 285 1825 Antisense
CGATCCGGCGCCGAACAGTAACGGA 311 249 1914 Antisense
GTCACACCTGGAAGTGCTGCATACA 15 465 1963 Antisense
GAACATGATCAACGCATCTCAGGAT 549 351 2034 Antisense
Sequence Source Affymetrix Proprietary Database