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[186877_at]

Description Y51H7BR.4 /REP_DB=WormBase Gene ID /WP=CE25373 /TR=Q9N3J9 /GB=AAF60747.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 11      4grp_total > 04      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 123.4
(-1.3)
P 		61.4
(-2.9)
P 		58.3
(-3)
P 		286.4
(3)
P 		228
B 108.2
(-0.9)
P 		55.6
(-2.8)
P 		51.5
(-3)
P 		213.8
(3)
P 		162
C 121.8
(-1.2)
P 		72.4
(-2.3)
P 		43.4
(-3)
P 		301
(3)
P 		258
avr 117.8
(-1.1) 		63.1
(-2.7) 		51.1
(-3) 		267.1
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 112.3
(-1)
P 		150.8
(1.4)
P 		175.4
(3)
P 		118.2
(-0.6)
P 		104.9
(-1.4)
P 		80.2
(-3)
P 		95
B 141
(0.9)
P 		169.7
(3)
P 		131.8
(0.2)
P 		88.4
(-3)
P 		159.1
(2.2)
P 		148
(1.4)
P 		81
C 113
(-1)
P 		203.2
(3)
P 		98.9
(-1.6)
P 		84.5
(-2.2)
P 		66.4
(-3)
P 		92.4
(-1.9)
P 		137
avr 122.1
(-1.1) 		174.6
(3) 		135.4
(-0) 		97
(-3) 		110.1
(-2) 		106.9
(-2.2) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 44.9
(3)
P 		13.3
(-3)
P 		15.2
(-2.6)
P 		41.9
(2.4)
P 		32
B 34.5
(1)
P 		13.7
(-2.7)
P 		11.9
(-3)
P 		45.6
(3)
P 		34
C 40.3
(1.2)
P 		20.8
(-2)
P 		15.1
(-3)
P 		50.8
(3)
P 		36
avr 39.9
(1.8) 		15.9
(-2.7) 		14.1
(-3) 		46.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 20.7
(-2.8)
P 		53.6
(3)
P 		38.2
(0.3)
P 		30
(-1.2)
P 		31.6
(-0.9)
P 		19.5
(-3)
P 		34
B 49.1
(0.7)
P 		56.5
(1.8)
P 		32
(-1.8)
P 		23.4
(-3)
P 		64.7
(3)
P 		55.2
(1.6)
P 		41
C 41.9
(0.3)
P 		62
(3)
P 		25.2
(-1.9)
P 		17
(-3)
P 		21.5
(-2.4)
P 		30.9
(-1.1)
P 		45
avr 37.2
(-0.6) 		57.4
(3) 		31.8
(-1.5) 		23.5
(-3) 		39.3
(-0.2) 		35.2
(-0.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5264
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.4 NCBI
Target Description Y51H7BR.4 /REP_DB=WormBase Gene ID /WP=CE25373 /TR=Q9N3J9 /GB=AAF60747.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061586
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061586 NCBI Caenorhabditis elegans Y51H7BR.4 (Y51H7BR.4) mRNA, complete cds. None
Y51H7BR.4 ENSEMBL cdna:known chromosome:CEL140:II:1533520:1534245:1 gene:Y51H7BR.4 None
GENEFINDER00000028997 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1533520:1534394:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1533518-1534192(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7BR.4
Entrez Gene 190169 Entrez gene
SwissProt Q9N3J9 EMBL-EBI
WormBase CE36038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60747 Hypothetical protein Y51H7BR.4 [Caenorhabditis elegans] ref|NP_493987.2| Y51H7BR.4 [Caenorhabditis elegans] 4.0E-73
blast AAF60747 Hypothetical protein Y51H7BR.4 [Caenorhabditis elegans] ref|NP_493987.2| Y51H7BR.4 [Caenorhabditis elegans] 5.0E-59
blast CAE62891 Hypothetical protein CBG07079 [Caenorhabditis briggsae] 7.0E-33
blast CAE62891 Hypothetical protein CBG07079 [Caenorhabditis briggsae] 8.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493987.2 4 7-29,49-71,78-100,110-129
Y51H7BR.4 4 7-29,49-71,78-100,110-129
GENEFINDER00000028997 4 7-30,50-72,79-101,111-133
Sequence
Target Sequence 
>C. ELEGANS:186877_AT
gatgaggaccttaacctggacttttattctaatgcagctagtcttttcgtgtgcatgttt
tatagcttcattggcgattataagtgcaaaatttaactcagtttcagtatatgaggataa
acaatatattagttcttcaagtatgaaaaactttttaaaaaaacctacaaacttcgagtg
gtggatattctgtggtttaagcttttcaatgataatcaatactgtagcagcaatgtatgc
acttgcagagcacaataggtttttattaataccgcatatttttcttttgaatttttttcc
tcaaaaaatttcaaaattcaatttaatttcagattttatgcaattcccttgcttgttatg
tgttacactatacaatttcaaatttcgactctacagatttcaactggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGGACCTTAACCTGGACTTTT 269 411 21 Antisense
GGACTTTTATTCTAATGCAGCTAGT 21 525 38 Antisense
GCAGCTAGTCTTTTCGTGTGCATGT 699 313 54 Antisense
GTGCATGTTTTATAGCTTCATTGGC 292 481 71 Antisense
AAACTTCGAGTGGTGGATATTCTGT 83 127 189 Antisense
GATATTCTGTGGTTTAAGCTTTTCA 448 427 204 Antisense
GCAGCAATGTATGCACTTGCAGAGC 510 313 247 Antisense
AATACCGCATATTTTTCTTTTGAAT 34 173 288 Antisense
TTTCAGATTTTATGCAATTCCCTTG 411 671 347 Antisense
AATTCCCTTGCTTGTTATGTGTTAC 267 177 362 Antisense
TCGACTCTACAGATTTCAACTGGCA 229 601 405 Antisense
Sequence Source Affymetrix Proprietary Database