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[186875_at]

Description H04M03.11 /REP_DB=WormBase Gene ID /WP=CE20930 /TR=Q9TYR2 /GB=AAD12796.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 4.2
(-3)
A 		17.3
(1)
A 		23.8
(3)
A 		21.2
(2.2)
A 		20
B 6.7
(-0.7)
A 		8.1
(0.2)
A 		12.2
(3)
A 		3.3
(-3)
A 		9
C 6.2
(-3)
A 		64.3
(3)
A 		7.4
(-2.9)
A 		64.1
(3)
A 		58
avr 5.7
(-3) 		29.9
(3) 		14.5
(-0.8) 		29.5
(2.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 8
(-2.7)
A 		9.8
(-2.4)
A 		10.2
(-2.4)
A 		35.6
(1.1)
A 		49.3
(3)
A 		5.5
(-3)
A 		44
B 6.5
(-3)
A 		11
(-2.4)
A 		54.9
(3)
A 		25.2
(-0.7)
A 		11.9
(-2.3)
A 		6.7
(-3)
A 		48
C 8.9
(-3)
A 		43.6
(2.5)
A 		9.4
(-2.9)
A 		22.6
(-0.8)
A 		46.7
(3)
A 		12.9
(-2.4)
A 		38
avr 7.8
(-3) 		21.5
(-0.1) 		24.8
(0.6) 		27.8
(1.3) 		36
(3) 		8.4
(-2.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.5
(-3)
A 		3.8
(-0.1)
A 		6.2
(3)
A 		3.1
(-1)
A 		5
B 2.1
(1)
A 		2
(0.7)
A 		2.8
(3)
A 		0.7
(-3)
A 		2
C 2.1
(-3)
A 		18.5
(3)
A 		2.6
(-2.8)
A 		10.8
(0.2)
A 		16
avr 1.9
(-3) 		8.1
(3) 		3.9
(-1.1) 		4.9
(-0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		3.5
(-2)
A 		2.2
(-2.6)
A 		9
(0.4)
A 		14.9
(3)
A 		1.3
(-3)
A 		14
B 2.3
(-3)
A 		3.7
(-2.2)
A 		13.3
(3)
A 		6.7
(-0.6)
A 		4.8
(-1.6)
A 		2.5
(-2.9)
A 		11
C 3.3
(-2.6)
A 		13.3
(2.1)
A 		2.4
(-3)
A 		4.5
(-2)
A 		15.1
(3)
A 		4.3
(-2.1)
A 		13
avr 2.4
(-3) 		6.8
(-0.1) 		6
(-0.7) 		6.7
(-0.2) 		11.6
(3) 		2.7
(-2.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10797
Sequence Type Exemplar sequence
Representative Public ID H04M03.11 NCBI
Target Description H04M03.11 /REP_DB=WormBase Gene ID /WP=CE20930 /TR=Q9TYR2 /GB=AAD12796.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068482 NCBI Caenorhabditis elegans H04M03.11 (H04M03.11) mRNA, complete cds. 11/11 None
GENEFINDER00000034813 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5882737:5883976:-1 11/11 None
H04M03.11 ENSEMBL cdna:known chromosome:CEL140:IV:5882737:5883976:-1 gene:H04M03.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034800 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5882742-5883982(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H04M03.11
Entrez Gene 186689 Entrez gene
SwissProt Q9TYR2 EMBL-EBI
WormBase CE20930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12796 Hypothetical protein H04M03.11 [Caenorhabditis elegans] ref|NP_500883.1| H04M03.11 [Caenorhabditis elegans] 3.0E-82
blast CAE72632 Hypothetical protein CBG19830 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500883.1 1 52-74
H04M03.11 1 52-74
GENEFINDER00000034813 1 52-74
Sequence
Target Sequence 
>C. ELEGANS:186875_AT
gaaatccacggaaactgccacgtttccgtcaattgaaccgtttagcgatttcgatacttg
tcagactgttccatcgggtcatgcttgcgaacatttttgttcggtgctcaaaactgctca
tgagaattacaaccgaaaatccagttactttctccattatatccttggaggtattcttgt
cgttttgtgcctaatttccattgttttgtttattaagatatgtgaaatgaagaaagacca
ctccgacgagatgaatattactcaattgcatgaaaaggaacagaaacgagaagctttgtt
tgcagaaaatgatccggatgccgaatcttcaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCCACGGAAACTGCCACGTTT 162 363 21 Antisense
TTTCCGTCAATTGAACCGTTTAGCG 200 595 43 Antisense
TAGCGATTTCGATACTTGTCAGACT 673 651 63 Antisense
TTGTCAGACTGTTCCATCGGGTCAT 387 703 78 Antisense
ATCGGGTCATGCTTGCGAACATTTT 518 35 93 Antisense
TGTTCGGTGCTCAAAACTGCTCATG 503 561 118 Antisense
ATCCAGTTACTTTCTCCATTATATC 618 37 159 Antisense
ATCCTTGGAGGTATTCTTGTCGTTT 348 39 181 Antisense
CTTGTCGTTTTGTGCCTAATTTCCA 57 219 196 Antisense
TGAAGAAAGACCACTCCGACGAGAT 477 573 248 Antisense
GATCCGGATGCCGAATCTTCAAAGT 118 417 331 Antisense
Sequence Source Affymetrix Proprietary Database