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[186873_at]

Description F07H5.3 /REP_DB=WormBase Gene ID /WP=CE09230 /TR=SW:Q19183 /GB=CAA92664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_high_8_8 > 07      6grp_highest_nonorm > 80      6grp_total > 35      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 290.8
(-0.1)
P 		162.8
(-3)
P 		250.3
(-1)
P 		427.5
(3)
P 		265
B 276.2
(3)
P 		219.2
(1)
P 		103.4
(-3)
M 		262.5
(2.5)
P 		173
C 93.7
(-3)
P 		157.7
(-1)
P 		206.6
(0.4)
P 		290.2
(3)
P 		197
avr 220.2
(-1.4) 		179.9
(-3) 		186.8
(-2.7) 		326.7
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 312.9
(3)
P 		246.2
(1.3)
P 		194.2
(-0)
P 		291.7
(2.5)
P 		77.5
(-3)
P 		253.5
(1.5)
P 		235
B 284.3
(2.4)
P 		307.9
(3)
P 		138.5
(-1.6)
P 		136.4
(-1.7)
P 		86.9
(-3)
P 		213.2
(0.4)
P 		221
C 324.2
(1.8)
P 		343.4
(2.3)
P 		377.3
(3)
P 		100.9
(-3)
P 		113.2
(-2.7)
P 		130.4
(-2.4)
P 		276
avr 307.1
(3) 		299.2
(2.8) 		236.7
(1) 		176.3
(-0.7) 		92.5
(-3) 		199
(-0) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 105.9
(3)
P 		35.3
(-3)
P 		65.4
(-0.4)
P 		62.6
(-0.7)
P 		71
B 88.1
(3)
P 		54.1
(-0.2)
P 		23.9
(-3)
M 		55.9
(-0)
P 		64
C 31
(-3)
P 		45.3
(-0.9)
P 		72
(3)
P 		48.9
(-0.4)
P 		41
avr 75
(3) 		44.9
(-3) 		53.8
(-1.2) 		55.8
(-0.8) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 57.7
(0.2)
P 		87.6
(3)
P 		42.3
(-1.2)
P 		74
(1.7)
P 		23.4
(-3)
P 		61.7
(0.6)
P 		64
B 98.9
(2.7)
P 		102.5
(3)
P 		33.6
(-3)
P 		36.1
(-2.8)
P 		35.3
(-2.9)
P 		79.5
(1)
P 		69
C 120.2
(3)
P 		104.8
(2.1)
P 		96
(1.5)
P 		20.3
(-3)
P 		36.6
(-2)
P 		43.7
(-1.6)
P 		100
avr 92.3
(2.5) 		98.3
(3) 		57.3
(-0.7) 		43.5
(-1.9) 		31.8
(-3) 		61.6
(-0.3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3777
Sequence Type Exemplar sequence
Representative Public ID F07H5.3 NCBI
Target Description F07H5.3 /REP_DB=WormBase Gene ID /WP=CE09230 /TR=SW:Q19183 /GB=CAA92664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F07H5.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F07H5.3 F07H5.3 /REP_DB=WormBase Gene ID /WP=CE09230 /TR=SW:Q19183 /GB=CAA92664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8784449-8784944(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:186873_AT
gtgtctctgcactactattttggaaatgcattttgtcggttccatgtcactgcattctat
ctccctttttctgaagcacctctctctcactcttttctatatttccaaccaaacatctct
tctctctctcttatgtgtctagctcttttctcgacttgtcatgcactctccacctctctt
cgcattgccgcaaaaatcgacgaaggcttcagtcgtggccgctcgggtgcccgagcgcgg
tgccgcggctgtcagaggcccacaaatggtcttatattcctgaacgattgggaaacctgt
tcctcatatcacaaaggaggctggaagcttgttgaattcattgaggtcaatgacgcatcg
cttctcacacacgtcttgaatcgaacgtggctttactgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCTCTGCACTACTATTTTGGAA 441 487 22 Antisense
TGCATTTTGTCGGTTCCATGTCACT 205 579 48 Antisense
CACTCTTTTCTATATTTCCAACCAA 142 197 109 Antisense
TCTCTTATGTGTCTAGCTCTTTTCT 201 613 148 Antisense
TCTTTTCTCGACTTGTCATGCACTC 681 615 165 Antisense
CTCTCTTCGCATTGCCGCAAAAATC 657 229 195 Antisense
TCGACGAAGGCTTCAGTCGTGGCCG 322 599 218 Antisense
GAAACCTGTTCCTCATATCACAAAG 163 359 313 Antisense
TGAGGTCAATGACGCATCGCTTCTC 85 567 363 Antisense
CTTCTCACACACGTCTTGAATCGAA 317 221 382 Antisense
GAATCGAACGTGGCTTTACTGTATT 425 329 399 Antisense
Sequence Source Affymetrix Proprietary Database