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[186871_at]

Description F59E12.11 /REP_DB=WormBase Gene ID /WP=CE11538 /TR=O01902 /GB=AAB54260.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 78      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 589.5
(3)
P 		552
(1.4)
P 		451.3
(-3)
P 		503.8
(-0.7)
P 		138
B 672
(3)
P 		541.7
(0.3)
P 		378.3
(-3)
P 		527.3
(0)
P 		294
C 627.5
(3)
P 		487.4
(-2.9)
P 		485.2
(-3)
P 		505.3
(-2.2)
P 		142
avr 629.7
(3) 		527
(-0.2) 		438.3
(-3) 		512.1
(-0.7) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 503.8
(-0.2)
P 		468.6
(-1.2)
P 		406.9
(-3)
P 		464
(-1.3)
P 		497.4
(-0.3)
P 		611
(3)
P 		204
B 496.4
(-0.1)
P 		374.8
(-2.6)
P 		354.8
(-3)
P 		424
(-1.6)
P 		484.6
(-0.4)
P 		648.7
(3)
P 		294
C 601.1
(1.1)
P 		383.6
(-3)
P 		510.7
(-0.6)
P 		410.4
(-2.5)
P 		462.5
(-1.5)
P 		698.7
(3)
P 		315
avr 533.8
(0.1) 		409
(-3) 		424.1
(-2.6) 		432.8
(-2.4) 		481.5
(-1.2) 		652.8
(3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 214.6
(3)
P 		119.8
(-1)
P 		118
(-1.1)
P 		73.8
(-3)
P 		141
B 214.3
(3)
P 		133.8
(-0.8)
P 		87.7
(-3)
P 		112.4
(-1.8)
P 		127
C 207.7
(3)
P 		140.1
(-0.3)
P 		169.1
(1.1)
P 		85.2
(-3)
P 		123
avr 212.2
(3) 		131.2
(-1) 		124.9
(-1.3) 		90.5
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 92.9
(-2.7)
P 		166.6
(3)
P 		88.6
(-3)
P 		117.7
(-0.8)
P 		150.1
(1.7)
P 		148.8
(1.6)
P 		78
B 172.7
(0.3)
P 		124.7
(-1.5)
P 		86.2
(-3)
P 		112.3
(-2)
P 		196.9
(1.3)
P 		241.9
(3)
P 		156
C 222.8
(2.6)
P 		117
(-1.6)
P 		130
(-1.1)
P 		82.5
(-3)
P 		149.7
(-0.3)
P 		233.9
(3)
P 		151
avr 162.8
(0.4) 		136.1
(-1.1) 		101.6
(-3) 		104.2
(-2.9) 		165.6
(0.6) 		208.2
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4258
Sequence Type Exemplar sequence
Representative Public ID F59E12.11 NCBI
Target Description F59E12.11 /REP_DB=WormBase Gene ID /WP=CE11538 /TR=O01902 /GB=AAB54260.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062701 NCBI Caenorhabditis elegans F59E12.11 (F59E12.11) mRNA, complete cds. 11/11 None
SNAP00000018070 ENSEMBL cdna:SNAP chromosome:CEL140:II:5648157:5649043:-1 11/11 None
GENEFINDER00000018076 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5648157:5649043:-1 11/11 None
F59E12.11 ENSEMBL cdna:known chromosome:CEL140:II:5647969:5649439:-1 gene:F59E12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5648154-5649408(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59E12.11
Entrez Gene 173955 Entrez gene
SwissProt O01902 EMBL-EBI
WormBase CE28570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54260 Hypothetical protein F59E12.11 [Caenorhabditis elegans] ref|NP_495102.1| F59E12.11 [Caenorhabditis elegans] 1.0E-103
blast CAE59155 Hypothetical protein CBG02460 [Caenorhabditis briggsae] 3.0E-80
Sequence
Target Sequence 
>C. ELEGANS:186871_AT
ttttgccggtgattccagccgtaataggcaaacgagatccacaaacgaatcaaggagctt
cttacactcatcaaaaaatcagttcgcggcccttttttcgactagcaacacgattacaag
aacattttgccgttaatgcgaaagcagtggcagcagatcaagctaaaattccagcaactt
gcaagagtgttgaagcgaaaatgatcagacttattgaagaaacaagagctcataaagaac
aacatgacggttttatggctgcattgagcggacttaatcaattgcacgatgacatctgta
gtattcagataattcttgaagatattgtgccaatggttgaaacgcttaatgaaattctaa
ctcccgacgaacgtcttcctcctcttaatcttggctcagtgctcgacagatctcccgttc
caagcagtgatagctcacttcaaagtacgccccgccataatcaaaatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGCCGGTGATTCCAGCCGTAAT 107 671 419 Antisense
CAAGGAGCTTCTTACACTCATCAAA 11 185 469 Antisense
ATCAAAAAATCAGTTCGCGGCCCTT 27 25 488 Antisense
GCCCTTTTTTCGACTAGCAACACGA 688 285 507 Antisense
ACATGACGGTTTTATGGCTGCATTG 519 105 660 Antisense
GAGCGGACTTAATCAATTGCACGAT 103 387 684 Antisense
TGAAATTCTAACTCCCGACGAACGT 213 569 768 Antisense
CCTCTTAATCTTGGCTCAGTGCTCG 141 267 799 Antisense
TCTCCCGTTCCAAGCAGTGATAGCT 496 609 829 Antisense
GATAGCTCACTTCAAAGTACGCCCC 472 421 847 Antisense
TACGCCCCGCCATAATCAAAATATT 555 645 864 Antisense
Sequence Source Affymetrix Proprietary Database